Detail information of GWHGAAZE004527


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011096520.12.0379E-162PREDICTED: chlorophyll a-b binding protein 21, chloroplastic [Sesamum indicum]
Swissprottr|P27493|CB22_TOBAC7E-164Chlorophyll a-b binding protein 21, chloroplastic (Precursor)
trEMBLtr|O64442|O64442_NICSY1E-162Light harvesting chlorophyll a/b-binding protein {ECO:0000313|EMBL:BAA25388.1} (Precursor)
TAIR10AT1G29910.17E-121chlorophyll A/B binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene118408988118409683-
GWHAAZE00000001mRNA118408988118409683-
GWHAAZE00000001exon118408988118409683-
GWHAAZE00000001CDS118408988118409683-
Transcript Sequence

Network for GWHGAAZE004527

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind311976.90E-51
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08912LHCB1 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1813.815
SRR3591706second leaf5956.858
SRR3591707mature leaf4599.261
SRR3591708Shoot apex2795.344
SRR3591709Stem2006.177
SRR3591710White floral bud136.326
SRR3591711White flower143.513
SRR3591712Green floral bud116.805
SRR3591713Yellow flower32.770
SRP173429 SRR8316895Juvenile bud stage 331.500
SRR8316896Juvenile bud stage 235.558
SRR8316897Juvenile bud stage 154.244
SRR8316894Third green stage 68.446
SRR8316900Third green stage 63.320
SRR8316901Third green stage 67.440
SRR8316898Complete white stage 18.181
SRR8316899Complete white stage 47.257
SRR8316903Complete white stage 47.961
SRR8316902Silver flowering stage5.733
SRR8316904Silver flowering stage12.987
SRR8316905Silver flowering stage1.314
SRR8316906Gold flowering stage 10.577
SRR8316907Gold flowering stage 5.970
SRR8316908Gold flowering stage 11.651
SRP132670SRR6706286Control108.276
SRR6706287Light intensity 50%57.802
SRR6706288Light intensity 20%48.003
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1318.476
CNS0095593Slightly white alabastrum(diploid) 2184.479
CNS0095594Slightly white alabastrum(diploid) 3261.209
CNS0095595Whole white alabastrum(diploid) 282.742
CNS0095596Whole white alabastrum(diploid) 379.682
CNS0095597Whole white alabastrum(diploid) 460.112
CNS0095598Silvery flower (diploied) 1708.483
CNS0095599Silvery flower (diploied) 2730.715
CNS0095600Silvery flower (diploied) 3151.398
CNS0095601Golden flower (diploid) 1861.119
CNS0095602Golden flower (diploid) 2455.429
CNS0095603Golden flower (diploid) 3441.190
CNS0095604Slightly white alabastrum(tetraploid) 1201.761
CNS0095605Slightly white alabastrum(tetraploid) 2266.114
CNS0095606Slightly white alabastrum(tetraploid) 3303.359
CNS0095607Whole white alabastrum(tetraploid) 1135.227
CNS0095608Whole white alabastrum(tetraploid) 256.193
CNS0095609Whole white alabastrum(tetraploid) 389.115
CNS0095610Silvery flower (tetraploid) 1224.633
CNS0095611Silvery flower (tetraploid) 2393.462
CNS0095612Silvery flower (tetraploid) 398.449
CNS0095613Golden flower (tetraploid) 136.997
CNS0095614Golden flower (tetraploid) 2253.427
CNS0095615Golden flower (tetraploid) 363.853
CRA001975CRR073297Stem 1109.136
CRR073298Stem 279.316
CRR073299Stem 3198.415
CRR073300Leaf 113.546
CRR073301Leaf 217.152
CRR073302Leaf 320.157
CRR073303Juvenile bud 19.169
CRR073304Juvenile bud 28.803
CRR073305Juvenile bud 311.186
CRR073306Third green 11.535
CRR073307Third green 22.972
CRR073308Third green 39.307
CRR073309Second white 13.597
CRR073310Second white 23.696
CRR073311Second white 33.591
CRR073312Silver flowering 10.411
CRR073313Silver flowering 22.716
CRR073314Silver flowering 32.719
CRR073315Gold flowering 11992.691
CRR073316Gold flowering 21337.589
CRR073317Gold flowering 31412.390
CRR073318Tawny withering 1136.910
CRR073319Tawny withering 264.269
CRR073320Tawny withering 373.536