Detail information of GWHGAAZE004464


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10075.10unnamed protein product [Coffea canephora]
COGNP_487506.11E-38hypothetical protein alr3466
Swissprottr|Q3Y8L7|DAW1_CHLRE2E-18Dynein assembly factor with WDR repeat domains 1
trEMBLtr|A0A068UNG1|A0A068UNG1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313|EMBL:CDP10075.1}
TAIR10AT3G18140.15E-162Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene117638326117645215-
GWHAAZE00000001mRNA117638326117645215-
GWHAAZE00000001exon117645108117645215-
GWHAAZE00000001exon117644254117644355-
GWHAAZE00000001exon117644030117644142-
GWHAAZE00000001exon117643864117643933-
GWHAAZE00000001exon117643658117643735-
GWHAAZE00000001exon117639948117640064-
GWHAAZE00000001exon117639742117639845-
GWHAAZE00000001exon117639511117639590-
GWHAAZE00000001exon117639244117639303-
GWHAAZE00000001exon117638326117638450-
GWHAAZE00000001CDS117645108117645215-
GWHAAZE00000001CDS117644254117644355-
GWHAAZE00000001CDS117644030117644142-
GWHAAZE00000001CDS117643864117643933-
GWHAAZE00000001CDS117643658117643735-
GWHAAZE00000001CDS117639948117640064-
GWHAAZE00000001CDS117639742117639845-
GWHAAZE00000001CDS117639511117639590-
GWHAAZE00000001CDS117639244117639303-
GWHAAZE00000001CDS117638326117638450-
Transcript Sequence

Network for GWHGAAZE004464

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4036620.16
PF00400.33WD40691062.50E-08
PF00400.33WD401121470.011
PF00400.33WD402022460.00014
PF00400.33WD402532883.50E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K08266MLST8, GBL PI3K-Akt signaling pathway map04151
mTOR signaling pathwaymap04150
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.259
SRR3591706second leaf29.723
SRR3591707mature leaf33.405
SRR3591708Shoot apex46.022
SRR3591709Stem34.371
SRR3591710White floral bud36.939
SRR3591711White flower38.971
SRR3591712Green floral bud35.118
SRR3591713Yellow flower37.314
SRP173429 SRR8316895Juvenile bud stage 19.762
SRR8316896Juvenile bud stage 25.243
SRR8316897Juvenile bud stage 8.252
SRR8316894Third green stage 9.852
SRR8316900Third green stage 24.013
SRR8316901Third green stage 25.017
SRR8316898Complete white stage 11.683
SRR8316899Complete white stage 26.884
SRR8316903Complete white stage 16.351
SRR8316902Silver flowering stage13.413
SRR8316904Silver flowering stage18.096
SRR8316905Silver flowering stage10.097
SRR8316906Gold flowering stage 40.034
SRR8316907Gold flowering stage 40.155
SRR8316908Gold flowering stage 36.108
SRP132670SRR6706286Control25.196
SRR6706287Light intensity 50%28.920
SRR6706288Light intensity 20%29.697
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.778
CNS0095593Slightly white alabastrum(diploid) 229.073
CNS0095594Slightly white alabastrum(diploid) 327.776
CNS0095595Whole white alabastrum(diploid) 226.656
CNS0095596Whole white alabastrum(diploid) 330.013
CNS0095597Whole white alabastrum(diploid) 422.274
CNS0095598Silvery flower (diploied) 122.057
CNS0095599Silvery flower (diploied) 218.222
CNS0095600Silvery flower (diploied) 332.441
CNS0095601Golden flower (diploid) 127.723
CNS0095602Golden flower (diploid) 230.194
CNS0095603Golden flower (diploid) 328.558
CNS0095604Slightly white alabastrum(tetraploid) 129.897
CNS0095605Slightly white alabastrum(tetraploid) 225.683
CNS0095606Slightly white alabastrum(tetraploid) 336.795
CNS0095607Whole white alabastrum(tetraploid) 122.763
CNS0095608Whole white alabastrum(tetraploid) 222.926
CNS0095609Whole white alabastrum(tetraploid) 330.713
CNS0095610Silvery flower (tetraploid) 139.345
CNS0095611Silvery flower (tetraploid) 242.030
CNS0095612Silvery flower (tetraploid) 345.776
CNS0095613Golden flower (tetraploid) 136.078
CNS0095614Golden flower (tetraploid) 236.605
CNS0095615Golden flower (tetraploid) 337.707
CRA001975CRR073297Stem 129.481
CRR073298Stem 221.453
CRR073299Stem 322.901
CRR073300Leaf 123.041
CRR073301Leaf 221.537
CRR073302Leaf 315.888
CRR073303Juvenile bud 123.862
CRR073304Juvenile bud 221.154
CRR073305Juvenile bud 317.110
CRR073306Third green 117.001
CRR073307Third green 214.291
CRR073308Third green 315.221
CRR073309Second white 130.140
CRR073310Second white 225.491
CRR073311Second white 318.448
CRR073312Silver flowering 118.530
CRR073313Silver flowering 214.307
CRR073314Silver flowering 310.423
CRR073315Gold flowering 115.082
CRR073316Gold flowering 219.140
CRR073317Gold flowering 310.402
CRR073318Tawny withering 118.544
CRR073319Tawny withering 215.336
CRR073320Tawny withering 317.398