Gene detail

Detail information of GWHGAAZE004447

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33729.1	0	hypothetical protein JCGZ_07300 [Jatropha curcas]
COG	YP_003890366.1	1E-114	FMN-dependent alpha-hydroxy acid dehydrogenase
Swissprot	tr\|Q8LGU6\|CD27B_ARATH	0	Cell division cycle protein 27 homolog B
trEMBL	tr\|A0A067KPL9\|A0A067KPL9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP33729.1}
TAIR10	AT2G20000.1	0	CDC27 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117234385	117250314	+
GWHAAZE00000001	mRNA	117234385	117250314	+
GWHAAZE00000001	exon	117234385	117234534	+
GWHAAZE00000001	exon	117234658	117234782	+
GWHAAZE00000001	exon	117235366	117235412	+
GWHAAZE00000001	exon	117235568	117235645	+
GWHAAZE00000001	exon	117235841	117235965	+
GWHAAZE00000001	exon	117236078	117236144	+
GWHAAZE00000001	exon	117236236	117236298	+
GWHAAZE00000001	exon	117236398	117236467	+
GWHAAZE00000001	exon	117236544	117236644	+
GWHAAZE00000001	exon	117237086	117237190	+
GWHAAZE00000001	exon	117237454	117237632	+
GWHAAZE00000001	exon	117240594	117240708	+
GWHAAZE00000001	exon	117241641	117241713	+
GWHAAZE00000001	exon	117241830	117241939	+
GWHAAZE00000001	exon	117242660	117242706	+
GWHAAZE00000001	exon	117243993	117244090	+
GWHAAZE00000001	exon	117244257	117244552	+
GWHAAZE00000001	exon	117245103	117245258	+
GWHAAZE00000001	exon	117245557	117245619	+
GWHAAZE00000001	exon	117246216	117246429	+
GWHAAZE00000001	exon	117246874	117247097	+
GWHAAZE00000001	exon	117247186	117247251	+
GWHAAZE00000001	exon	117247547	117247666	+
GWHAAZE00000001	exon	117247860	117247936	+
GWHAAZE00000001	exon	117248123	117248242	+
GWHAAZE00000001	exon	117248425	117248644	+
GWHAAZE00000001	exon	117249795	117250076	+
GWHAAZE00000001	exon	117250264	117250314	+
GWHAAZE00000001	five_prime_UTR	117234385	117234388	+
GWHAAZE00000001	CDS	117234389	117234534	+
GWHAAZE00000001	CDS	117234658	117234782	+
GWHAAZE00000001	CDS	117235366	117235412	+
GWHAAZE00000001	CDS	117235568	117235645	+
GWHAAZE00000001	CDS	117235841	117235965	+
GWHAAZE00000001	CDS	117236078	117236144	+
GWHAAZE00000001	CDS	117236236	117236298	+
GWHAAZE00000001	CDS	117236398	117236467	+
GWHAAZE00000001	CDS	117236544	117236644	+
GWHAAZE00000001	CDS	117237086	117237190	+
GWHAAZE00000001	CDS	117237454	117237632	+
GWHAAZE00000001	CDS	117240594	117240708	+
GWHAAZE00000001	CDS	117241641	117241713	+
GWHAAZE00000001	CDS	117241830	117241939	+
GWHAAZE00000001	CDS	117242660	117242706	+
GWHAAZE00000001	CDS	117243993	117244090	+
GWHAAZE00000001	CDS	117244257	117244552	+
GWHAAZE00000001	CDS	117245103	117245258	+
GWHAAZE00000001	CDS	117245557	117245619	+
GWHAAZE00000001	CDS	117246216	117246429	+
GWHAAZE00000001	CDS	117246874	117247097	+
GWHAAZE00000001	CDS	117247186	117247251	+
GWHAAZE00000001	CDS	117247547	117247666	+
GWHAAZE00000001	CDS	117247860	117247936	+
GWHAAZE00000001	CDS	117248123	117248242	+
GWHAAZE00000001	CDS	117248425	117248644	+
GWHAAZE00000001	CDS	117249795	117250076	+
GWHAAZE00000001	CDS	117250264	117250314	+

Transcript Sequence
>GWHTAAZE004453 TCCAATGGGAATGATGGAGATAACCAATGTTATGGAGTATGAGGCCATCGCCAAGGAGAAATTGCCGAAGATGATCTATGACTACTATGCATCTGGTGCAGAGGATCAATGGACCCTCCAAGAGAACCGAAACGCATTCTCAAGGATCTTGTTTCGGCCTCGTATTCTTATTGACGTGAGCAAGATAGACATGGCCACAACTATCTTGGGCTTCAATATTTCAATGCCAATAATGATTGCTCCTACAGCTATGCAGAAAATGGCTCACCCTGAAGGAGAGTTTGCAACAGCAAGAGCAGCATCAGCTGCTGGCACAATCATGACATTATCCTCGTGGGCTACTTCCAGTGTTGAAGAAGTTGCTTCAACTGGACCTGGTGTTCGCTTTTTCCAGCTTTATGTCTACAAAAACAGAAACATTGTTACTCAACTTGTAAAAAGAGCTGAAAGGGCTGGCTTCAAGGCAATTTCCCTTACTGTGGATACTCCACGGCTCGGCCGAAGGGAAGCCGATATTAAGAACAGATTTACTTTGCCTCCACATTTGACATTGAAGAACTTTGAGGGATTGGATCTCGGAAAATTAGATAAGACTGATGACTCTGGACTAGCTTCGTATGTTGCTGGTCAGGTTGACCAGTCTTTTAGCTGGAAGGATGTGAAGTGGCTTCAAACAATCACCCATTTACCTATTGTAGTGAAGGGTGTAATAACTGCTGAGGACGCAAAGCTAGCAGTACAAGCTGGAGCAGCAGGGATTATTGTGTCAAATCACGGGGCTCGACAGCTTGATTATGTCCCCGCAACTATTATGGCTTTAGAAGAGGTCGTAAAAGCTACACAAGACAGAATACCTGTATTTCTGGATGGTGGTATTCGTCGTGGGACAGATGTCTTCAAAGCATTGGCTCTTGGAGCATCAGGCGTATTTATTGGGAGGCCGGTTTTGTTCTCATTGGCTGCTGATGGTGAGGCCGGTGTGAGGAAAGTACTTCAAATGCTTCGCGATGAGTTTGAGCTAACTATGGCATTAAGTGGCTGCCGTTCACTCAAAGAGATAACCCGAAACCATATTTTGGCTCCCTGGGACCCTCCTCGCGTTTCGCCCAGAGCAGATGAAATGGAGGCCATACTTACAGACTGTGTGCACAACAGTCTCCGCCACTTCATGTCCCGAAACGCCATCTTCATGTGCGACCGCCTCTGCGCCGAGTTTCCATCTGAGACAAACTTGCAATTGCTAGCTACCTGTTACTTGCAAAGCAATCAAGCGTACTCTGCTTACCATGTTTTAAAGGGAACACAAATGGCTCAATCCCGATTCTTGTTCGCGATATCATGCTTTAAAATGGATCTTCTTAAAGAAGCTGAAGCAGCATTATGTCCTCCTAATGAGCCTAATGCAGAGGTCCCGAATGGTGCATTTGGTCATTATCTTCTCGGGCTTATTTATAGGTACACTGATAGAAGGAAGAGTGCTGTTCATCACTTTAATCAGGCATTGTCAATAGATCCACTACTGTGGGATGCATATGCAGAGTTGTGTAGTTTAGGTGCTGCTGAAGAAGCAACTGCAGTTTTTGGTGAAGCAGCTTCTCTTTGCATTCAAAAGCAGTACTTGGATCATGGGTTTGCTTTCCAAAGCTTGCATGGATCTAGCGAGGATCTTAATTTAGGCTCTAGAAACATTGGAGTAGAAGAGGCCAGTCCAAGGCAATTGAAATATATGCATGGGAATAACATAAAAGATCATCATGGAGCTGCTATGTCTGGAGGTGCCACTTGTCAGCCTCCTAATGGTGGTTCTTCTAAGACATTTTACAATACTCCTTCACCAATGGTTGCACAGTTGTCAGGTGTTGCTCCACCACCAGTCTGTAGAAATGTTCAACCTAATGGCCCAAACCTGAGTGTACTTGGTGCTGATGGTTCCCCAAGGTCAACTGTGAACACGACAATGCAAGCTCCTCGAAGAAAGTTTGTGGATGAGGGGAAGCTGAGAAAGGAGCCACCAACACAAAAGTTTTTGCCCTTAAGTCAGAGAGCAGGTGCAAGAGCTGGAGCACGAATATCAGGGAGGTTATTCTCTGATTCGGGTCCTAGAAGAAGCACTAGACTTGCTGGAGAAACAGGGGCCAACACAAATTCAACTGCCACAACAGCCGGGAATGGAGCTACCCACTCTTCTAAATATCACGGTGGTTCTAAGTTAAGCTCTGCCACATTTCGCTCTGTCACAGTAAGGAAGGGCCAGTCTTGGACTAGTGAAAGTTTTGATGAAGGTGTACGCCACGAGGTTTATGACGACTCTCGTTCAAGCATTACTACCACTTCTACTTCATCTCCTTTGGGTGATGCTAGATCTCTTGAACAAGAAGGGGGGGCAATGGCTGCAGGTGGGGCCATTATCAGTGGGCCAAGAGTTATAAATGGTGCTTTGGAGATATTATCCCTCCTGAGAACTCTTGGGGAAGGGTATAGACTTTTGTGTGTGTATAGTTGCCAGGATGCACTAGATGTTTATCTGAAACTACCGCAGAAACACTATAACACGAGTTGGGTGCTCTCCCAGGTTGGGAAGGCACATTTTGAATTGGTTGATTATCTAGAAGCTGAACGCGCCTTCAGTCATGCCCATTTGGTGTCTCCATATAGTCTAGAAGGAATGGACATATATTCTACAGTTTTATATCATCTAAAGGAGGATATGAAGTTAAGTTACTTGGCTCAGGAGCTTATATCAACAGACCGCTTAGCTCCTCAATCCTGGTGTGCTATGGGAAATTGCTATAGCTTGCAGAAAGACCATGAAACTGCTCTTAAAAATTTCCAACGAGCTGTGCAACTAAATTCAAGATTTGCATATGCCCACACCCTTTGTGGTCACGAATATGTGGCCTTAGAGGATTTTGAGAATGGAATTAAATGTTACCAGAGTGCCCTTCGAGTTGACACAAGACATTACAACGCCTGGTATGGTCTTGGAATGATTTACCTGCGCCAAGAGAAGTTTGAATTCTCAGAGCATCACTTTCGAAAAGCTTTTCAAATCAATCCACGCTCTTCTGTTATAATGTCATATCTCGGGACTGCTTTGCATACGTTGAAGAGAAGTGTGGAAGCGTTGGCAATGATGGAGAAGGCTATTTTAGCCGATAAGAAGAACCCTCTCCCTATGTATCAGAAGGCTAACATACTTGTGAGCATGGAGAATTTCGACGGAGCTTTAGAAGTACTAGAGGATCTTAAAGAATATGCCCCTCGTGAAAGCAGTGTTTATGCTTTAATGGGCAAGATATACAAACGGCGCAATATGCACGACCAGGCTATGCTTCATTTTGGACTTGCTTTGGATTTGAAACCATCTGCAACAGATGTTGCCACCATTAAGGCTGCCATTGAGAAGTTGCATGTACCAGATGACATCGAAGAGAGCTTGTGA

Network for GWHGAAZE004447

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01070.19	FMN_dh	16	357	5.60E-138
PF12895.8	ANAPC3	389	460	5.20E-16
PF07719.18	TPR_2	473	504	5.40E-05
PF00515.29	TPR_1	920	951	2.30E-07
PF00515.29	TPR_1	988	1019	8.90E-07
PF14559.7	TPR_19	1038	1098	4.20E-07

Protein Sequence

>GWHPAAZE004450
MGMMEITNVMEYEAIAKEKLPKMIYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMATTILGFNISMPIMIAPTAMQKMAHPEGEFATARAASAAGTIMTLSSWATSSVEEVASTGPGVRFFQLYVYKNRNIVTQLVKRAERAGFKAISLTVDTPRLGRREADIKNRFTLPPHLTLKNFEGLDLGKLDKTDDSGLASYVAGQVDQSFSWKDVKWLQTITHLPIVVKGVITAEDAKLAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQDRIPVFLDGGIRRGTDVFKALALGASGVFIGRPVLFSLAADGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHILAPWDPPRVSPRADEMEAILTDCVHNSLRHFMSRNAIFMCDRLCAEFPSETNLQLLATCYLQSNQAYSAYHVLKGTQMAQSRFLFAISCFKMDLLKEAEAALCPPNEPNAEVPNGAFGHYLLGLIYRYTDRRKSAVHHFNQALSIDPLLWDAYAELCSLGAAEEATAVFGEAASLCIQKQYLDHGFAFQSLHGSSEDLNLGSRNIGVEEASPRQLKYMHGNNIKDHHGAAMSGGATCQPPNGGSSKTFYNTPSPMVAQLSGVAPPPVCRNVQPNGPNLSVLGADGSPRSTVNTTMQAPRRKFVDEGKLRKEPPTQKFLPLSQRAGARAGARISGRLFSDSGPRRSTRLAGETGANTNSTATTAGNGATHSSKYHGGSKLSSATFRSVTVRKGQSWTSESFDEGVRHEVYDDSRSSITTTSTSSPLGDARSLEQEGGAMAAGGAIISGPRVINGALEILSLLRTLGEGYRLLCVYSCQDALDVYLKLPQKHYNTSWVLSQVGKAHFELVDYLEAERAFSHAHLVSPYSLEGMDIYSTVLYHLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNSRFAYAHTLCGHEYVALEDFENGIKCYQSALRVDTRHYNAWYGLGMIYLRQEKFEFSEHHFRKAFQINPRSSVIMSYLGTALHTLKRSVEALAMMEKAILADKKNPLPMYQKANILVSMENFDGALEVLEDLKEYAPRESSVYALMGKIYKRRNMHDQAMLHFGLALDLKPSATDVATIKAAIEKLHVPDDIEESL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03350	APC3, CDC27	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity
GO:0010181	molecular_function	FMN binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.579
	SRR3591706	second leaf	7.933
	SRR3591707	mature leaf	11.371
	SRR3591708	Shoot apex	19.800
	SRR3591709	Stem	27.939
	SRR3591710	White floral bud	39.792
	SRR3591711	White flower	55.872
	SRR3591712	Green floral bud	26.198
	SRR3591713	Yellow flower	110.699
SRP173429	SRR8316895	Juvenile bud stage	14.836
	SRR8316896	Juvenile bud stage	22.932
	SRR8316897	Juvenile bud stage	5.999
	SRR8316894	Third green stage	8.939
	SRR8316900	Third green stage	22.868
	SRR8316901	Third green stage	22.087
	SRR8316898	Complete white stage	17.483
	SRR8316899	Complete white stage	32.904
	SRR8316903	Complete white stage	22.305
	SRR8316902	Silver flowering stage	13.666
	SRR8316904	Silver flowering stage	18.846
	SRR8316905	Silver flowering stage	10.606
	SRR8316906	Gold flowering stage	30.881
	SRR8316907	Gold flowering stage	31.447
	SRR8316908	Gold flowering stage	16.966
SRP132670	SRR6706286	Control	28.237
	SRR6706287	Light intensity 50%	28.370
	SRR6706288	Light intensity 20%	30.040
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.407
	CNS0095593	Slightly white alabastrum(diploid) 2	23.073
	CNS0095594	Slightly white alabastrum(diploid) 3	23.647
	CNS0095595	Whole white alabastrum(diploid) 2	19.985
	CNS0095596	Whole white alabastrum(diploid) 3	18.968
	CNS0095597	Whole white alabastrum(diploid) 4	20.168
	CNS0095598	Silvery flower (diploied) 1	27.633
	CNS0095599	Silvery flower (diploied) 2	27.988
	CNS0095600	Silvery flower (diploied) 3	36.697
	CNS0095601	Golden flower (diploid) 1	30.842
	CNS0095602	Golden flower (diploid) 2	39.706
	CNS0095603	Golden flower (diploid) 3	39.944
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.009
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.882
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.552
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.164
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.787
	CNS0095610	Silvery flower (tetraploid) 1	34.137
	CNS0095611	Silvery flower (tetraploid) 2	28.084
	CNS0095612	Silvery flower (tetraploid) 3	35.779
	CNS0095613	Golden flower (tetraploid) 1	28.096
	CNS0095614	Golden flower (tetraploid) 2	34.474
	CNS0095615	Golden flower (tetraploid) 3	23.666
CRA001975	CRR073297	Stem 1	25.201
	CRR073298	Stem 2	21.999
	CRR073299	Stem 3	25.092
	CRR073300	Leaf 1	26.171
	CRR073301	Leaf 2	25.379
	CRR073302	Leaf 3	21.731
	CRR073303	Juvenile bud 1	27.396
	CRR073304	Juvenile bud 2	31.340
	CRR073305	Juvenile bud 3	28.216
	CRR073306	Third green 1	24.331
	CRR073307	Third green 2	24.233
	CRR073308	Third green 3	21.644
	CRR073309	Second white 1	31.654
	CRR073310	Second white 2	27.948
	CRR073311	Second white 3	24.040
	CRR073312	Silver flowering 1	24.667
	CRR073313	Silver flowering 2	26.288
	CRR073314	Silver flowering 3	23.135
	CRR073315	Gold flowering 1	7.083
	CRR073316	Gold flowering 2	9.451
	CRR073317	Gold flowering 3	7.351
	CRR073318	Tawny withering 1	31.445
	CRR073319	Tawny withering 2	37.032
	CRR073320	Tawny withering 3	19.552