Gene detail

Detail information of GWHGAAZE004344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278239.1	0	PREDICTED: delta(14)-sterol reductase [Nelumbo nucifera]
COG	YP_004916595.1	8E-80	delta(14)-sterol reductase
Swissprot	tr\|Q9LDR4\|ERG24_ARATH	0	Delta(14)-sterol reductase
trEMBL	tr\|V7BHD4\|V7BHD4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17252.1}
TAIR10	AT3G52940.1	6E-136	Ergosterol biosynthesis ERG4/ERG24 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115557387	115562999	+
GWHAAZE00000001	mRNA	115557387	115562999	+
GWHAAZE00000001	exon	115557387	115557440	+
GWHAAZE00000001	exon	115557557	115557674	+
GWHAAZE00000001	exon	115557953	115558023	+
GWHAAZE00000001	exon	115558900	115558956	+
GWHAAZE00000001	exon	115559754	115559845	+
GWHAAZE00000001	exon	115560655	115560702	+
GWHAAZE00000001	exon	115561082	115561199	+
GWHAAZE00000001	exon	115561283	115561329	+
GWHAAZE00000001	exon	115561979	115562086	+
GWHAAZE00000001	exon	115562423	115562542	+
GWHAAZE00000001	exon	115562679	115562753	+
GWHAAZE00000001	exon	115562846	115562999	+
GWHAAZE00000001	CDS	115557387	115557440	+
GWHAAZE00000001	CDS	115557557	115557674	+
GWHAAZE00000001	CDS	115557953	115558023	+
GWHAAZE00000001	CDS	115558900	115558956	+
GWHAAZE00000001	CDS	115559754	115559845	+
GWHAAZE00000001	CDS	115560655	115560702	+
GWHAAZE00000001	CDS	115561082	115561199	+
GWHAAZE00000001	CDS	115561283	115561329	+
GWHAAZE00000001	CDS	115561979	115562086	+
GWHAAZE00000001	CDS	115562423	115562542	+
GWHAAZE00000001	CDS	115562679	115562753	+
GWHAAZE00000001	CDS	115562846	115562999	+

Transcript Sequence
>GWHTAAZE004350 ATGGATCTTGATTTCATTCTCAACGCGAACGACTTGATTCCTTCTTGGACCTCAGTCGCTTTACTAGTTGCCTTCTTCACTTACTTGGGATTTGCCGGATCTCTTCTCCCCGGAAAGCTTGTTCCCGGTGTTACCTTACCCGATGGCACTCGTCTCCACTATCGCTGCAATGGTTTGCTATCGCTTGTTTTGCTGGTTGTGCTACTCGGGATTGGAGTTTCTGTTAATTCTTTATCCCCCACTGTAATATCAGACAGAGGACTTGAGCTTTTGTCAACAACTTTTGTATTCAGTATCCTTGTGACATTGGTACTTTATGTTGGTGGCCGCAAATCAAGCAATAAGGGCTCATCCTTAAAGCCTCATGTCACGGGAAATATAATCCATGACTGGTGGTTTGGGATACAGCTGAATCCTCAATTCATGGGCATCGATCTCAAATTTTTCTTTGTTAGAGCTGGAATGATGGGATGGCTACTTATCAATCTTTCAGTCCTTGCAAAATCTGGGCAAGACTCCTGGAGCCAGTCTATGATTCTCTACCAGCTATTCTGTTTGCTATACATTTTGGACTACTTTTATCATGAAGAGTACATGACATCAACATGGGATATAATTGCCGAGCGCTTAGGCTTTATGCTGGTTTTTGGAGATCTAGTGTGGATTCCCTTCACCTTTAGCATCCAGGCATGTAAAGATGGACTTCAGATAGAGTATATGGTATTCAGAGGAGCTAACAAGCAGAAGCATGTTTTTAAGAATAATCCCAAAGCACTCATATGGGGCAGGCCTCCAAAAGTTATAGGGGGAAAGTTGCTCGCTTCTGGTTATTGGGGAATTGCAAGGCACTGTAATTACCTAGGGGATTTGTTAGTGGCACTATCGTTTAGCTTACCTTGCGGGATAAGTTCCCCAGTTCCGTACTTTTATCCTATCTATCTTTTGATTCTGCTAATATGGAGAGAGAGAAGGGACGAAGCTCGATGTGCTGAGAAGTACAAAGAAGTATGGGCTGAATACTGCAAACTTGTACCATGGAGGATACTACCGTACGCTTATTAA

Network for GWHGAAZE004344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01222.18	ERG4_ERG24	14	230	3.20E-44
PF01222.18	ERG4_ERG24	237	353	2.80E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00222	TM7SF2, ERG24	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016020	cellular_component	membrane
GO:0016628	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.839
	SRR3591706	second leaf	13.693
	SRR3591707	mature leaf	7.411
	SRR3591708	Shoot apex	30.297
	SRR3591709	Stem	35.273
	SRR3591710	White floral bud	14.109
	SRR3591711	White flower	12.328
	SRR3591712	Green floral bud	23.509
	SRR3591713	Yellow flower	8.160
SRP173429	SRR8316895	Juvenile bud stage	28.229
	SRR8316896	Juvenile bud stage	40.188
	SRR8316897	Juvenile bud stage	23.785
	SRR8316894	Third green stage	18.890
	SRR8316900	Third green stage	60.654
	SRR8316901	Third green stage	51.341
	SRR8316898	Complete white stage	14.449
	SRR8316899	Complete white stage	64.130
	SRR8316903	Complete white stage	22.486
	SRR8316902	Silver flowering stage	6.525
	SRR8316904	Silver flowering stage	9.644
	SRR8316905	Silver flowering stage	2.550
	SRR8316906	Gold flowering stage	11.972
	SRR8316907	Gold flowering stage	15.205
	SRR8316908	Gold flowering stage	14.241
SRP132670	SRR6706286	Control	28.646
	SRR6706287	Light intensity 50%	30.925
	SRR6706288	Light intensity 20%	34.530
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.618
	CNS0095593	Slightly white alabastrum(diploid) 2	61.014
	CNS0095594	Slightly white alabastrum(diploid) 3	36.202
	CNS0095595	Whole white alabastrum(diploid) 2	42.962
	CNS0095596	Whole white alabastrum(diploid) 3	36.137
	CNS0095597	Whole white alabastrum(diploid) 4	27.824
	CNS0095598	Silvery flower (diploied) 1	27.075
	CNS0095599	Silvery flower (diploied) 2	24.138
	CNS0095600	Silvery flower (diploied) 3	22.971
	CNS0095601	Golden flower (diploid) 1	23.582
	CNS0095602	Golden flower (diploid) 2	19.460
	CNS0095603	Golden flower (diploid) 3	18.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.709
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.573
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.392
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.958
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.206
	CNS0095610	Silvery flower (tetraploid) 1	18.756
	CNS0095611	Silvery flower (tetraploid) 2	18.312
	CNS0095612	Silvery flower (tetraploid) 3	12.290
	CNS0095613	Golden flower (tetraploid) 1	9.555
	CNS0095614	Golden flower (tetraploid) 2	14.142
	CNS0095615	Golden flower (tetraploid) 3	4.188
CRA001975	CRR073297	Stem 1	33.581
	CRR073298	Stem 2	30.246
	CRR073299	Stem 3	18.775
	CRR073300	Leaf 1	39.244
	CRR073301	Leaf 2	43.614
	CRR073302	Leaf 3	19.813
	CRR073303	Juvenile bud 1	29.420
	CRR073304	Juvenile bud 2	16.681
	CRR073305	Juvenile bud 3	26.261
	CRR073306	Third green 1	1.719
	CRR073307	Third green 2	2.343
	CRR073308	Third green 3	2.885
	CRR073309	Second white 1	2.828
	CRR073310	Second white 2	2.423
	CRR073311	Second white 3	1.185
	CRR073312	Silver flowering 1	1.459
	CRR073313	Silver flowering 2	1.099
	CRR073314	Silver flowering 3	0.594
	CRR073315	Gold flowering 1	4.866
	CRR073316	Gold flowering 2	10.559
	CRR073317	Gold flowering 3	3.317
	CRR073318	Tawny withering 1	18.640
	CRR073319	Tawny withering 2	17.986
	CRR073320	Tawny withering 3	23.251