Gene detail

Detail information of GWHGAAZE004333

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007214567.1	0	hypothetical protein PRUPE_ppa000837mg [Prunus persica]
COG	YP_004775215.1	4E-55	RHS repeat-associated core domain-containing protein
Swissprot	tr\|O65440\|BAME3_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (Precursor)
trEMBL	tr\|M5WRB8\|M5WRB8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15766.1}
TAIR10	AT4G20270.1	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115290666	115295165	-
GWHAAZE00000001	mRNA	115290666	115295165	-
GWHAAZE00000001	exon	115290666	115291000	-
GWHAAZE00000001	exon	115292628	115293245	-
GWHAAZE00000001	exon	115293404	115295165	-
GWHAAZE00000001	CDS	115293404	115295165	-
GWHAAZE00000001	CDS	115292628	115293245	-
GWHAAZE00000001	CDS	115290666	115291000	-

Transcript Sequence
>GWHTAAZE004339 ATGGCTTCTTCCCTTTCCTTTCTCTTCCTTGTTTTCCTCTGTTTGTGTCATTCAATTTCCTCACATAATCTCTCACTCAAATGGCAGGCCTCAGTTCTAGTCTCACTCAAAAATTCTATCGACTCGTCGAGCCCTTGTTTGGATAGCTGGAATCTCTCAAACTACACTTCTTTATGTTCATGGGCAGGGGTGAAATGCGATGGAAAGGATTTCTCTGTAGTTTCCCTCGACATTTCCAACTATAACCTCTCGGGCACCTTATCCCCTTCGATCACCAAACTTCAAAGCCTCAAGGCCTTGAACCTATCAAACAATCAGTTTAACGGAAGCTTGAACTGGGAATTCACTTCCTTGAAGGAACTAAAAGTGTTAGATGCCTACGACAACAACTTCTCTGGATCACTCCCACTTGGTGTCACTAGAATTCCCGAGCTAAAGCACTTGAACTTAGGAGGGAATTATTTTACAGGGGAAATCCCTCCGAGCTATGGAAATATTATTCAGCTGAATCATCTGTCCCTTGCCGGAAATGACTTGCGCGGTCCTATACCACGTGAGCTTGGTAACCTCGCTAACTTGACTCATCTTTATTTGGGCTATTTCAATCAGTTTGATTGTGAACTTCCAAAAGAGTTTGGTAAGTTAGTGAATTTGGTCCATTTAGATGTTTCCAATTGCGGTCTAAAGGGCCAAATTCCTCAAGAACTGGGAAATTTGAACAAGCTTGACACACTTTTCTTGCAAACCAATCAGCTTTCTGGCCCAATCCCACCTCAATTGGGGAACTTAAGTAGCTTAAAATCCCTTGATCTTTCACTCAATGGGCTCACTGGGGAAATCCCATTCGAGTTTTCCTTACTCAAAGAACTCACCCTCTTGAATCTTTTCATCAACAAGTTCCATGGAAATATTCCTAGATTCATAGCTGAATTACCCAAGTTGGAAGTATTGAAGCTATGGAGAAACAACTTCACTGGATCAATTCCGTCCAAGCTTGGGCAGAATGGGAAACTTATCGAGCTTGATCTTTCTACTAATAAGCTCACTGGGTTGATTCCGAAATCTCTTTGCTTCGGCCAGAAATTGAAAATCTTGATTCTTCTCGACAATTTTCTCTTCGGTTCTCTTCCAGATGATTTGGGCAGATGTGAGACACTATCAAGAGTAAGACTCGGGCAGAATTATTTGAGCGGGACGATACCGAATGGCTTCCTCTACTTGCCAGAACTTTCACTAGTTGAACTGCAGAATAATTACCTCACTGGAAAATTCACAGAAGAGAAAAGAAAGGTACGCTCAAAACTCGACCAACTCAATCTCTCAAATAACCGCTTGTTTGGTTCCATTCCTAGCTCTTTAGGAGATTTCTCGGGGTTAAAGACTCTTACGCTAAGTGGAAACCAATTCACTGGTGAGATTCCACCGGGTTTAGGCCGGTTGAAGAACATCTTGAAGGTGGACATGAGTAGAAACAATTTCTCTGGCAGAATCCCAATTGAAATTGGAAATTGTCTCTCATTGACTTACTTAGATTTGAGCCAAAATCAACTAAAAGGGCCAATACCGATCCAAATTGGTCAAATTCATGTACTAAATTACTTCAACATCTCCTATAACTACTTGAACGAAAGCCTTCCAAAGGAAATTGGTTCCATAAAGAGCCTAACATCTGCAGATTTCTCACACAATAACTTCACCGGTCCAATACCCGAAAACGGGCAGTACTCGTTCTTCAACGCTACCTCTTTCACTGGCAACCCCGCCATCATCAAGACCCAAAAGGCCAAAAGGAATTCAAATTCATGGAAACTCACTGCTTTTCAAAAGCTAGGATTTGGAAGCGAAGACATTATAGAATGCTTAAAGGATAACAACATCATTGGCAGAGGCGGGGCGGGGATCGTTTACAGTGGCACAATGCCAAATGGAGACCAAGTGGCAATCAAGAAACTTGGGATAAGCAAAGGCACTTCATCACATGATAATGGTCTCTCGGCCGAAATCCAAACACTTGGGAAAATTAGGCACCGTTATATAGTCCGTTTGCTCGCATTTTGTTCAAATAAAGAAACAAATTTGCTCGTTTACGAGTACATGCCTAATGGGAGCTTGGGTGAAGTTCTTCATGGGAAAGCGGGCGGGGGCCTTAAATGGGAAACTAGATTGAAGATAGCCATTGAAGCCGCAAAGGGTTTGTGTTATTTGCACCACGATTGTTCGCCTTTGATTCTGCATCGCGATGTCAAGTCAAACAATATTTTGCTTAGCTCGGATTTTGAGGCGCATGTTGCAGATTTTGGGCTGGCTAAGTTCTTGCAGGACACTGGAACATCAGAGTGTATGTCTGCTATTGCTGGTTCTTATGGGTACATTGCTCCAGAGTATGCCTACACACTAAAAGTGGACGAGAAGAGCGACGTGTACAGTTTTGGGGTAGTACTATTGGAGCTAATAACGGGGCGAAAGCCAGTGGGCGACTTTGGTGAAGAAGGACTAGACATAGTCCAGTGGGTGAAAATTCAGACAAATTGGACCAGAGAAAGGGTGGCAAAGATCACAGATGAGAGACTCAAGAATGTACCGCTAAATGAAGCAATGCAAGTTTTCTTTGTGGCAATGTTGTGCGTACAAGAGCACAGCGTGGAGCGACCCGCCATGAGAGAAGTTGTTCAAATGCTTGCACAAGCCAAGCAACCTAACACCTTTCATATGTAA

Network for GWHGAAZE004333

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	67	1.40E-06
PF00560.34	LRR_1	145	162	0.9
PF13516.7	LRR_6	264	279	0.48
PF00560.34	LRR_1	337	357	1.5
PF00069.26	Pkinase	623	891	3.80E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.003
	SRR3591706	second leaf	18.980
	SRR3591707	mature leaf	5.174
	SRR3591708	Shoot apex	42.099
	SRR3591709	Stem	30.294
	SRR3591710	White floral bud	13.987
	SRR3591711	White flower	14.769
	SRR3591712	Green floral bud	9.999
	SRR3591713	Yellow flower	3.081
SRP173429	SRR8316895	Juvenile bud stage	9.173
	SRR8316896	Juvenile bud stage	7.799
	SRR8316897	Juvenile bud stage	3.532
	SRR8316894	Third green stage	4.394
	SRR8316900	Third green stage	3.599
	SRR8316901	Third green stage	4.542
	SRR8316898	Complete white stage	1.707
	SRR8316899	Complete white stage	7.705
	SRR8316903	Complete white stage	4.760
	SRR8316902	Silver flowering stage	6.969
	SRR8316904	Silver flowering stage	17.005
	SRR8316905	Silver flowering stage	7.950
	SRR8316906	Gold flowering stage	5.415
	SRR8316907	Gold flowering stage	9.172
	SRR8316908	Gold flowering stage	9.619
SRP132670	SRR6706286	Control	2.516
	SRR6706287	Light intensity 50%	2.586
	SRR6706288	Light intensity 20%	1.962
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.883
	CNS0095593	Slightly white alabastrum(diploid) 2	6.908
	CNS0095594	Slightly white alabastrum(diploid) 3	5.941
	CNS0095595	Whole white alabastrum(diploid) 2	4.220
	CNS0095596	Whole white alabastrum(diploid) 3	1.327
	CNS0095597	Whole white alabastrum(diploid) 4	2.215
	CNS0095598	Silvery flower (diploied) 1	7.111
	CNS0095599	Silvery flower (diploied) 2	5.167
	CNS0095600	Silvery flower (diploied) 3	11.273
	CNS0095601	Golden flower (diploid) 1	7.582
	CNS0095602	Golden flower (diploid) 2	6.038
	CNS0095603	Golden flower (diploid) 3	6.971
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.450
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.163
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.615
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.748
	CNS0095610	Silvery flower (tetraploid) 1	11.038
	CNS0095611	Silvery flower (tetraploid) 2	7.749
	CNS0095612	Silvery flower (tetraploid) 3	28.599
	CNS0095613	Golden flower (tetraploid) 1	4.917
	CNS0095614	Golden flower (tetraploid) 2	3.399
	CNS0095615	Golden flower (tetraploid) 3	7.666
CRA001975	CRR073297	Stem 1	12.124
	CRR073298	Stem 2	10.990
	CRR073299	Stem 3	18.845
	CRR073300	Leaf 1	7.298
	CRR073301	Leaf 2	5.629
	CRR073302	Leaf 3	4.220
	CRR073303	Juvenile bud 1	5.439
	CRR073304	Juvenile bud 2	3.761
	CRR073305	Juvenile bud 3	10.213
	CRR073306	Third green 1	43.653
	CRR073307	Third green 2	51.874
	CRR073308	Third green 3	49.872
	CRR073309	Second white 1	14.401
	CRR073310	Second white 2	9.215
	CRR073311	Second white 3	5.624
	CRR073312	Silver flowering 1	1.415
	CRR073313	Silver flowering 2	2.018
	CRR073314	Silver flowering 3	1.237
	CRR073315	Gold flowering 1	2.528
	CRR073316	Gold flowering 2	3.440
	CRR073317	Gold flowering 3	3.074
	CRR073318	Tawny withering 1	22.042
	CRR073319	Tawny withering 2	14.343
	CRR073320	Tawny withering 3	25.105