Gene detail

Detail information of GWHGAAZE004326

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593374.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Nicotiana tomentosiformis]
COG	YP_004775215.1	4E-63	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	0	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|A0A0A0LRA0\|A0A0A0LRA0_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN64445.1}
TAIR10	AT4G20140.1	0	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115165911	115170083	+
GWHAAZE00000001	mRNA	115165911	115170083	+
GWHAAZE00000001	exon	115165911	115169316	+
GWHAAZE00000001	exon	115169591	115170083	+
GWHAAZE00000001	CDS	115165911	115169316	+
GWHAAZE00000001	CDS	115169591	115169964	+
GWHAAZE00000001	three_prime_UTR	115169965	115170083	+

Transcript Sequence
>GWHTAAZE004332 ATGGCAATGCTACAAAGATTTTTACCATTTGCTATGGTTGTGTTTCTCGTCCTATTCTGTGGGCTTGTACTGTCCAAAGACACCGACTCGGCTGTGAGAATTCTTTTGGAGGTGAAAGAATCATTTGCTGAAGACCCACAAAATGTACTTCAAGATTGGGCTGAAGACAACCCAAGATTTTGTACATGGAGAGGGGTTTTGTGTGGGATAGGCACGAGTGGTGACTCAGTGAGTCAAGTGGTGGGTCTCAACCTTTCAGACTCGTCACTCGGCGGCTCTATTTCTTCCTCACTCGGCCTTTTAAAGAACCTAATCCACCTTGATCTTTCTTCTAATCAGCTCTCGGGTCCCATTCCACCTAATCTCTCTAACCTTTCTTCTTTGGTATCTTTGATTCTCTTCTCTAACCAACTATCCGGTCCCATACCGAGTCAACTCGGCCAGCTCTCGAGTCTACAAGTCCTTCGGATAGGTGACAATGGCCTTTCAGGTCCAATTCCGGCGTCATTTGGTGATCTCAAAAACTTGGTCGTTCTTGGTTTGGCCTCTTGTAAACTCTCCGGGCAAATACCGCCGGAGTTGGGTCGACTCAGTTGGCTCGAGAATTTGATTCTGCAGCAAAATCAGCTAGTGGGTCCGATTCCAGCAGACATTGGTAACTGTTCCAGCCTTTTGATTTTCACTGCTGCTGTCAACAATCTCAATGGGTCAATCCCAGCTGAATTGGGTCAGCTCAAGAATCTACAGACACTGAATCTTGCCAATAATACTCTGTCGGGGGAGATTCCGAGTCAACTCGGTGAGTTGAATCAGCTTGTTTATCTGAATCTCTTGGGGAATCAGCTTGATGGGCCAATCCCAAAGTCTTTGGCTCAATTGGGTAATCTTAAAAATCTTGATTTCTCGGCGAACAAGCTCACCGGAGAAATCCCCGAAGAATTTGGGAACATGGGCCAGCTTGTTTTCTTGGTACTCTCAAGCAATAATCTTTCTGGTGTAATACCAAGAAGTATATGCTCTAATGCCACTAGTTTGGAACACTTGATGCTGCCGGAGAATCAACTTTCCGGGGAGATTCCAGTGGAGCTGACTAAATGTCGCTCACTAAAACAGCTTGATTTGTCCAATAATACTCTCAATGGGTCAATTCCGGTGGAGCTTTATGGGATGGTTGAATTGACTGATCTCATGCTTAACAACAACACTCTAATTGGTTCAATTTCTCCATTGATAGCAAACCTCACCAATCTCCAAACACTGGCACTGTATCAAAACAATTTGAAGGGGAATTTGCCCAGGGAAATTGGAATGCTTGGAGAGCTGGAGACTCTGTACCTTTATAACAATCAATTATCTGGGGAGATTCCAATGGAGATTGGTAACTGTTCAAGCTTACAAATGATTGATTTCTATGGAAATCATTTCAATGGGGAAATACCCATTACAATTGGGAGGCTAAAGCAACTGAATTTGCTTCACCTCAGGGAAAATGATCTCTCTGGCAATATTCCCGCCACTTTGGGCAACTGCCACCAACTAACCATCCTTGACTTGGCCGACAACCGCCTCTCCGGTGGGATTCCGGCAACCTTCGGGTATCTCCAGTCACTCGAACAATTCATGCTCTACAACAATTCGCTTGAAGGTAATCTCCCCACTGAACTAGCAAATTTAGCAAACTTGACTAGAGTGAATCTTTCTCATAACAAGTTGAATGGAAGCATATTGGCATTGTGTAGTTCAAATACCTATCTGTCATTTGATGTCACAAACAATGCATTTGATCATGAGATTCCACCCCAATTGGGGAATTCAATCTCCCTTCAACGATTAAGATTAGGCAACAACCAATTCACCGGAAAAATCCCTTGGACGTTGGGTGAAATCCGAGAGCTGTCGCTCTTGGATCTTTCAGGCAACTCACTCACTGGATCATTACCGGCTCAGCTCTCACAGTGCAAAAAATTGACCCATATTGATCTAAACAACAACCTTCTTTTGGGTCCAATCCCCACGTGGTTCGGTACATTATCTTCTTTGGGTGAGCTCAAGCTCTCTTCCAATCTTTTTACGGGTCCAATTCCTAACGGATTACTCAATTGTTCTAATCTTATTGTTCTTTCTCTTGATGGGAATTCGCTTAATGGAACCCTTCCTCTTGAAATCAGTAAACTTGCTTCCATCAATGTCCTTAACCTCAACGGAAACCAGTTCTTTGGGTCCATCCCTCGAAAAATAGGCGAATTAAGCAAGCTTTATGAGCTAAGGCTATCAAGAAACAGCTTTAGTGGTGAGATACCTAATGAGCTTGGGCAGCTTCAAAATCTTCAAAGCGTTTTAGACCTTAGCTACAATAATCTCACTGGCAAAATCCCACCGTCCATTGGAAAACTGGCGAAGCTCGAAGTGTTAGATTTATCTCACAACAAGCTAGTTGGTGAAGTCCCTCGCCAGCTCACTGAAATGAGCAGTTTAGGCCATATGAATCTCTCTTACAACAATCTTCAAGGCAAGTTGGATAAAAGCTATTCGCATTGGCCAGCAGATTCGTTTCTTGGAAATATGCGTCTCTGTGGAAATCCCCTTGGTCGTTGCATTGGATCCGATGATCAGCATTCAAAGCTGAGCGAATCAACAGTGGTGATAGTTTCAGCAGTATTGACCGTAGCTGCCATTGTCCTAATGTTAATTGGAGCTACCCTTTTCTTCAAACGCAAGCACGAGTGCATTAGACGCGCTAGTGAAGTGAAGTTTGTGTACTCTTTGAGTTCTTCACAAGCACAGCGAAGGCCTCTCTTTCAATACGGTGCTCCTTCGAAGCATCATTTTCAATGGGAAGACATAATGGAAGCCACAAACAATCTAAGTGACGAGTTCATAATTGGGTCAGGAGGATCGGGTACTATTTACAAAGCCGAATTGATCACTGGGGAGACTATAGCCGTGAAGAAAATACAGAGAAAAGATGATATATTGTTTGATAAAAGCTTCGCAAGAGAAATTAAGACGCTCGGGAGAATCAAGCACAGGCATTTGGTCAAGTTACTCGGGTATTGTAGCAACAGAGGAACAGGGCCGAATTTGTTGATATACGAGTACATGGAAAATGGAAGCTTATGGGATTGGCTGCACAAAAAACCAGTGAATATTAAGAAGAAGAAGAGCCTTGATTGGGAAGTGCGATTGAAAATAGCAGTAGGGTTAGCCCAGGGAGTGGAGTATCTTCATCATGATTGTGTGCCAAAGATAGTTCACAGGGACATCAAATCAAGCAACTTGTTGCTAGATTCTAATCTGGAGGCGCATTTGGGAGATTTTGGGCTAGCAAAGGCAATGAATGAGAACTATGATTCGGCTACCGAGTCAAACTCTTGGTTCGCAGGGTCCTATGGTTACATTGCTCCAGAGTATGCGTATTCGTTCAAGGCATCAGAGAAAAGCGACGTGTACAGCATGGGGATTGTGTTAATAGAGCTTGTGAGTGGCAGAATGCCAACTGACGGGAGCTTTGGGGAGGATATGGACATGGTGAGGTGGGTCGAATCGCGTATTGAAATGCAAGGAGGATCTGGGCCAGAGGAGCTGATAGATCCTGTGCTAAAGCCACTGTTGCCTAATGAAGAGAGTGCTGCATTTCAGGTGCTTGAAATAGGCCTGAGATGCACCAAAACTGCACCGGCCGAGAGGCCGTCGGCCCGTCAAGCAACGGATCTGTTGTTGCATGTGTTAAATGATAGGACCTACCATTGCGAGAAGATGAGTCCAGATCCTTATGCGTGAATAGTTTGATGAAATTAGATTTGTTTTTGGGAAAGTGAAAGGAAAGGCTTTGGTTTGGTTTGGTTTTTGTGAATAAATTCTTTCTAATTTGAAGTGAAATGTGACACTTAATCTACTAA

Network for GWHGAAZE004326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	30	68	2.20E-07
PF00560.34	LRR_1	103	125	0.38
PF13855.7	LRR_8	512	571	8.90E-09
PF13855.7	LRR_8	779	835	1.10E-07
PF00069.26	Pkinase	960	1236	8.90E-45

Protein Sequence

>GWHPAAZE004329
MAMLQRFLPFAMVVFLVLFCGLVLSKDTDSAVRILLEVKESFAEDPQNVLQDWAEDNPRFCTWRGVLCGIGTSGDSVSQVVGLNLSDSSLGGSISSSLGLLKNLIHLDLSSNQLSGPIPPNLSNLSSLVSLILFSNQLSGPIPSQLGQLSSLQVLRIGDNGLSGPIPASFGDLKNLVVLGLASCKLSGQIPPELGRLSWLENLILQQNQLVGPIPADIGNCSSLLIFTAAVNNLNGSIPAELGQLKNLQTLNLANNTLSGEIPSQLGELNQLVYLNLLGNQLDGPIPKSLAQLGNLKNLDFSANKLTGEIPEEFGNMGQLVFLVLSSNNLSGVIPRSICSNATSLEHLMLPENQLSGEIPVELTKCRSLKQLDLSNNTLNGSIPVELYGMVELTDLMLNNNTLIGSISPLIANLTNLQTLALYQNNLKGNLPREIGMLGELETLYLYNNQLSGEIPMEIGNCSSLQMIDFYGNHFNGEIPITIGRLKQLNLLHLRENDLSGNIPATLGNCHQLTILDLADNRLSGGIPATFGYLQSLEQFMLYNNSLEGNLPTELANLANLTRVNLSHNKLNGSILALCSSNTYLSFDVTNNAFDHEIPPQLGNSISLQRLRLGNNQFTGKIPWTLGEIRELSLLDLSGNSLTGSLPAQLSQCKKLTHIDLNNNLLLGPIPTWFGTLSSLGELKLSSNLFTGPIPNGLLNCSNLIVLSLDGNSLNGTLPLEISKLASINVLNLNGNQFFGSIPRKIGELSKLYELRLSRNSFSGEIPNELGQLQNLQSVLDLSYNNLTGKIPPSIGKLAKLEVLDLSHNKLVGEVPRQLTEMSSLGHMNLSYNNLQGKLDKSYSHWPADSFLGNMRLCGNPLGRCIGSDDQHSKLSESTVVIVSAVLTVAAIVLMLIGATLFFKRKHECIRRASEVKFVYSLSSSQAQRRPLFQYGAPSKHHFQWEDIMEATNNLSDEFIIGSGGSGTIYKAELITGETIAVKKIQRKDDILFDKSFAREIKTLGRIKHRHLVKLLGYCSNRGTGPNLLIYEYMENGSLWDWLHKKPVNIKKKKSLDWEVRLKIAVGLAQGVEYLHHDCVPKIVHRDIKSSNLLLDSNLEAHLGDFGLAKAMNENYDSATESNSWFAGSYGYIAPEYAYSFKASEKSDVYSMGIVLIELVSGRMPTDGSFGEDMDMVRWVESRIEMQGGSGPEELIDPVLKPLLPNEESAAFQVLEIGLRCTKTAPAERPSARQATDLLLHVLNDRTYHCEKMSPDPYA

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.059
	SRR3591706	second leaf	0.297
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.712
	SRR3591709	Stem	0.379
	SRR3591710	White floral bud	1.264
	SRR3591711	White flower	0.654
	SRR3591712	Green floral bud	3.415
	SRR3591713	Yellow flower	0.244
SRP173429	SRR8316895	Juvenile bud stage	1.878
	SRR8316896	Juvenile bud stage	4.437
	SRR8316897	Juvenile bud stage	1.770
	SRR8316894	Third green stage	1.437
	SRR8316900	Third green stage	3.215
	SRR8316901	Third green stage	3.148
	SRR8316898	Complete white stage	0.167
	SRR8316899	Complete white stage	0.942
	SRR8316903	Complete white stage	0.601
	SRR8316902	Silver flowering stage	0.355
	SRR8316904	Silver flowering stage	0.504
	SRR8316905	Silver flowering stage	0.219
	SRR8316906	Gold flowering stage	0.921
	SRR8316907	Gold flowering stage	0.508
	SRR8316908	Gold flowering stage	0.710
SRP132670	SRR6706286	Control	4.222
	SRR6706287	Light intensity 50%	3.434
	SRR6706288	Light intensity 20%	3.449
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.908
	CNS0095593	Slightly white alabastrum(diploid) 2	1.156
	CNS0095594	Slightly white alabastrum(diploid) 3	2.759
	CNS0095595	Whole white alabastrum(diploid) 2	1.134
	CNS0095596	Whole white alabastrum(diploid) 3	1.047
	CNS0095597	Whole white alabastrum(diploid) 4	1.618
	CNS0095598	Silvery flower (diploied) 1	1.348
	CNS0095599	Silvery flower (diploied) 2	0.121
	CNS0095600	Silvery flower (diploied) 3	0.589
	CNS0095601	Golden flower (diploid) 1	0.668
	CNS0095602	Golden flower (diploid) 2	0.743
	CNS0095603	Golden flower (diploid) 3	0.429
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.202
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.828
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.165
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.564
	CNS0095610	Silvery flower (tetraploid) 1	0.285
	CNS0095611	Silvery flower (tetraploid) 2	0.446
	CNS0095612	Silvery flower (tetraploid) 3	0.860
	CNS0095613	Golden flower (tetraploid) 1	0.146
	CNS0095614	Golden flower (tetraploid) 2	0.160
	CNS0095615	Golden flower (tetraploid) 3	0.149
CRA001975	CRR073297	Stem 1	3.996
	CRR073298	Stem 2	3.744
	CRR073299	Stem 3	5.939
	CRR073300	Leaf 1	1.915
	CRR073301	Leaf 2	2.194
	CRR073302	Leaf 3	1.394
	CRR073303	Juvenile bud 1	0.400
	CRR073304	Juvenile bud 2	0.195
	CRR073305	Juvenile bud 3	0.110
	CRR073306	Third green 1	0.587
	CRR073307	Third green 2	0.273
	CRR073308	Third green 3	0.554
	CRR073309	Second white 1	0.047
	CRR073310	Second white 2	0.187
	CRR073311	Second white 3	0.090
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.041
	CRR073314	Silver flowering 3	0.049
	CRR073315	Gold flowering 1	0.046
	CRR073316	Gold flowering 2	0.200
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.584
	CRR073319	Tawny withering 2	0.219
	CRR073320	Tawny withering 3	0.502