Detail information of GWHGAAZE004316


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008225931.10PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic isoform X3 [Prunus mume]
trEMBLtr|M5WHC5|M5WHC5_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ13217.1}
TAIR10AT4G20130.16E-150plastid transcriptionally active 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene115034713115039134-
GWHAAZE00000001mRNA115034713115039134-
GWHAAZE00000001exon115034713115034936-
GWHAAZE00000001exon115035252115035357-
GWHAAZE00000001exon115035557115035628-
GWHAAZE00000001exon115035849115035916-
GWHAAZE00000001exon115036243115036576-
GWHAAZE00000001exon115038024115038152-
GWHAAZE00000001exon115038609115038734-
GWHAAZE00000001exon115038913115039134-
GWHAAZE00000001CDS115038913115039134-
GWHAAZE00000001CDS115038609115038734-
GWHAAZE00000001CDS115038024115038152-
GWHAAZE00000001CDS115036243115036576-
GWHAAZE00000001CDS115035849115035916-
GWHAAZE00000001CDS115035557115035628-
GWHAAZE00000001CDS115035252115035357-
GWHAAZE00000001CDS115034713115034936-
Transcript Sequence

Network for GWHGAAZE004316

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00856.29SET582931.10E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.968
SRR3591706second leaf19.033
SRR3591707mature leaf12.939
SRR3591708Shoot apex33.297
SRR3591709Stem11.198
SRR3591710White floral bud7.615
SRR3591711White flower10.390
SRR3591712Green floral bud9.251
SRR3591713Yellow flower8.190
SRP173429 SRR8316895Juvenile bud stage 12.006
SRR8316896Juvenile bud stage 14.107
SRR8316897Juvenile bud stage 11.036
SRR8316894Third green stage 5.030
SRR8316900Third green stage 11.575
SRR8316901Third green stage 10.166
SRR8316898Complete white stage 1.309
SRR8316899Complete white stage 11.654
SRR8316903Complete white stage 4.141
SRR8316902Silver flowering stage1.475
SRR8316904Silver flowering stage1.941
SRR8316905Silver flowering stage0.861
SRR8316906Gold flowering stage 2.674
SRR8316907Gold flowering stage 3.043
SRR8316908Gold flowering stage 3.485
SRP132670SRR6706286Control13.581
SRR6706287Light intensity 50%11.449
SRR6706288Light intensity 20%11.826
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.345
CNS0095593Slightly white alabastrum(diploid) 27.557
CNS0095594Slightly white alabastrum(diploid) 39.864
CNS0095595Whole white alabastrum(diploid) 27.054
CNS0095596Whole white alabastrum(diploid) 37.302
CNS0095597Whole white alabastrum(diploid) 45.745
CNS0095598Silvery flower (diploied) 119.157
CNS0095599Silvery flower (diploied) 216.068
CNS0095600Silvery flower (diploied) 37.614
CNS0095601Golden flower (diploid) 115.834
CNS0095602Golden flower (diploid) 29.552
CNS0095603Golden flower (diploid) 38.013
CNS0095604Slightly white alabastrum(tetraploid) 111.590
CNS0095605Slightly white alabastrum(tetraploid) 29.214
CNS0095606Slightly white alabastrum(tetraploid) 317.180
CNS0095607Whole white alabastrum(tetraploid) 16.593
CNS0095608Whole white alabastrum(tetraploid) 24.968
CNS0095609Whole white alabastrum(tetraploid) 311.491
CNS0095610Silvery flower (tetraploid) 112.188
CNS0095611Silvery flower (tetraploid) 214.322
CNS0095612Silvery flower (tetraploid) 37.353
CNS0095613Golden flower (tetraploid) 15.936
CNS0095614Golden flower (tetraploid) 210.504
CNS0095615Golden flower (tetraploid) 35.695
CRA001975CRR073297Stem 123.429
CRR073298Stem 218.281
CRR073299Stem 320.453
CRR073300Leaf 113.571
CRR073301Leaf 212.188
CRR073302Leaf 311.235
CRR073303Juvenile bud 110.863
CRR073304Juvenile bud 24.789
CRR073305Juvenile bud 314.246
CRR073306Third green 10.240
CRR073307Third green 20.080
CRR073308Third green 30.935
CRR073309Second white 10.939
CRR073310Second white 20.160
CRR073311Second white 30.622
CRR073312Silver flowering 10.929
CRR073313Silver flowering 20.933
CRR073314Silver flowering 30.367
CRR073315Gold flowering 146.191
CRR073316Gold flowering 259.403
CRR073317Gold flowering 331.928
CRR073318Tawny withering 114.247
CRR073319Tawny withering 212.260
CRR073320Tawny withering 313.814