Gene detail

Detail information of GWHGAAZE004307

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006448615.1	0	hypothetical protein CICLE_v10015448mg [Citrus clementina]
Swissprot	tr\|Q9C5G0\|SUF4_ARATH	7E-142	Protein SUPPRESSOR OF FRI 4
trEMBL	tr\|A0A067GF31\|A0A067GF31_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO77245.1}
TAIR10	AT1G30970.1	5E-109	zinc finger (C2H2 type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114917935	114928138	+
GWHAAZE00000001	mRNA	114917935	114928138	+
GWHAAZE00000001	exon	114917935	114918134	+
GWHAAZE00000001	exon	114920754	114920908	+
GWHAAZE00000001	exon	114923901	114924018	+
GWHAAZE00000001	exon	114924806	114925200	+
GWHAAZE00000001	exon	114926467	114926621	+
GWHAAZE00000001	exon	114927023	114927154	+
GWHAAZE00000001	exon	114928067	114928138	+
GWHAAZE00000001	CDS	114917935	114918134	+
GWHAAZE00000001	CDS	114920754	114920908	+
GWHAAZE00000001	CDS	114923901	114924018	+
GWHAAZE00000001	CDS	114924806	114925200	+
GWHAAZE00000001	CDS	114926467	114926621	+
GWHAAZE00000001	CDS	114927023	114927154	+
GWHAAZE00000001	CDS	114928067	114928138	+

Transcript Sequence
>GWHTAAZE004313 ATGGGGAAGAAGAAGAAGAGGGTAGCATCTAATAATAAGGTGTGGTGTTATTACTGCGACAGAGAGTTCGATGACGAGAAGATATTGGTGCAGCACCAGAAGGCAAAGCACTTCAAGTGCCATGTCTGTCACAAGAAGCTCTCCACCGCTGGTGGCATGTCCATTCACGTCCTTCAGGTCCACAAAGAGACCGTATCCAAGGTTCCAAATGCAAAAGCTGGTAGAGAATCAACCGATATTGAAATCTATGGAATGCAGGGAATCCCAGCTGACGTTTTGGCAGCTCACTACGGAGAGGAAGGTATGGTTGGTGTGCATAATTTTCCTGTTAACTTGATTGGACTTGGTTGTCCATATGAAGATAATCCATCAAAAATAGCTAAAGTGGAGATCCCATCTTCTCAAGTTGCTGGTATTGTGCCGGGATCATTAGGTGTTGGGTATCCTCCCCAGTCAACTCTAGGCATGATGCATTATAATCCAGCATTACCAATGCGTCCTGCTGGCTGGCCCATTCCACCTCGACCCCAACCTTGGTTCCCCCCACATTCCGGTATCTCGGTCCCACCTCCGGCACCATTAGGATTAGTACAACAACCTCTATTCCCCGTCCAGAATGTGAGGCCTCCTATGTCAACTGCTGCATCACCGGGATTACAACAAATGCCGATTGCTCCTCCAGGAATGCTTGCTTCTACTACACCTTCTGTTCCTTTATCTCAACCGTTGTTCCCTGTTGTTGCTAATAACAATATACCTGCGGCCCAAAGCTCACCTTTCTCTGCACCTGTGCTTTCAACAAGTATTCCGTTAAGCTCTCCTGCAGAACTCAAAGGCTCAATTGACCTGCACGCCTCAAGCTTTCAAGGTGGAACTCCTGTGAATTCACATTCATATGCCTCTGGTCCAAATACTGGTGGTCCTTCAATCGGACCGCCTCCTGTAATTGCAAACAAAGCACCGGCTACCCAGCCAGCCACAAATGAGGTCTATTTAGTTTGGGATGACGAGGCAATGTCAATGGAGGAAAGAAGAATGTCATTGCTGAAGTATCAGGTGCATGATGAAACTAGCCAGGTAAGTTCTAATCACCCATTGTTCTATAATTCTTTCAAATGGATGATATGGCGTTTCTTTACACATCTAACCAGATGGATGAGCTCGATCGATGCAGCTATTGACAGGAGGATATCGGAAAGCAGGCTCGCTGGTCGTATGCCATTTTAG

Network for GWHGAAZE004307

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.233
	SRR3591706	second leaf	36.142
	SRR3591707	mature leaf	32.695
	SRR3591708	Shoot apex	60.744
	SRR3591709	Stem	58.999
	SRR3591710	White floral bud	47.275
	SRR3591711	White flower	44.874
	SRR3591712	Green floral bud	41.193
	SRR3591713	Yellow flower	53.771
SRP173429	SRR8316895	Juvenile bud stage	46.733
	SRR8316896	Juvenile bud stage	63.919
	SRR8316897	Juvenile bud stage	31.626
	SRR8316894	Third green stage	23.862
	SRR8316900	Third green stage	49.929
	SRR8316901	Third green stage	55.107
	SRR8316898	Complete white stage	21.396
	SRR8316899	Complete white stage	69.362
	SRR8316903	Complete white stage	50.884
	SRR8316902	Silver flowering stage	33.624
	SRR8316904	Silver flowering stage	45.743
	SRR8316905	Silver flowering stage	21.646
	SRR8316906	Gold flowering stage	71.265
	SRR8316907	Gold flowering stage	76.261
	SRR8316908	Gold flowering stage	77.942
SRP132670	SRR6706286	Control	52.904
	SRR6706287	Light intensity 50%	49.750
	SRR6706288	Light intensity 20%	50.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.656
	CNS0095593	Slightly white alabastrum(diploid) 2	35.319
	CNS0095594	Slightly white alabastrum(diploid) 3	35.135
	CNS0095595	Whole white alabastrum(diploid) 2	33.815
	CNS0095596	Whole white alabastrum(diploid) 3	28.927
	CNS0095597	Whole white alabastrum(diploid) 4	29.812
	CNS0095598	Silvery flower (diploied) 1	51.491
	CNS0095599	Silvery flower (diploied) 2	36.886
	CNS0095600	Silvery flower (diploied) 3	36.675
	CNS0095601	Golden flower (diploid) 1	45.829
	CNS0095602	Golden flower (diploid) 2	48.016
	CNS0095603	Golden flower (diploid) 3	43.787
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.530
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.811
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.486
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.992
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.883
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.274
	CNS0095610	Silvery flower (tetraploid) 1	66.204
	CNS0095611	Silvery flower (tetraploid) 2	51.419
	CNS0095612	Silvery flower (tetraploid) 3	55.691
	CNS0095613	Golden flower (tetraploid) 1	47.252
	CNS0095614	Golden flower (tetraploid) 2	59.259
	CNS0095615	Golden flower (tetraploid) 3	57.693
CRA001975	CRR073297	Stem 1	97.847
	CRR073298	Stem 2	83.271
	CRR073299	Stem 3	63.071
	CRR073300	Leaf 1	89.489
	CRR073301	Leaf 2	90.932
	CRR073302	Leaf 3	54.210
	CRR073303	Juvenile bud 1	46.312
	CRR073304	Juvenile bud 2	36.135
	CRR073305	Juvenile bud 3	53.727
	CRR073306	Third green 1	16.826
	CRR073307	Third green 2	15.891
	CRR073308	Third green 3	17.332
	CRR073309	Second white 1	18.496
	CRR073310	Second white 2	29.205
	CRR073311	Second white 3	24.456
	CRR073312	Silver flowering 1	25.541
	CRR073313	Silver flowering 2	21.232
	CRR073314	Silver flowering 3	22.871
	CRR073315	Gold flowering 1	26.346
	CRR073316	Gold flowering 2	40.534
	CRR073317	Gold flowering 3	21.174
	CRR073318	Tawny withering 1	68.450
	CRR073319	Tawny withering 2	63.405
	CRR073320	Tawny withering 3	74.170