Detail information of GWHGAAZE004292


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649043.11.24435E-90PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X4 [Vitis vinifera]
Swissprottr|Q5UBY2|FRS1_ARATH4E-56Protein FAR1-RELATED SEQUENCE 1
trEMBLtr|F6HF67|F6HF67_VITVI1E-91Putative uncharacterized protein {ECO:0000313|EMBL:CCB51023.1}
TAIR10AT4G19990.17E-49FAR1-related sequence 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene114679576114680196+
GWHAAZE00000001mRNA114679576114680196+
GWHAAZE00000001exon114679576114679929+
GWHAAZE00000001exon114679993114680196+
GWHAAZE00000001CDS114679576114679929+
GWHAAZE00000001CDS114679993114680196+
Transcript Sequence

Network for GWHGAAZE004292

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1111151.90E-29
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.113
SRR3591706second leaf3.109
SRR3591707mature leaf3.822
SRR3591708Shoot apex3.910
SRR3591709Stem3.126
SRR3591710White floral bud4.077
SRR3591711White flower3.613
SRR3591712Green floral bud4.519
SRR3591713Yellow flower1.282
SRP173429 SRR8316895Juvenile bud stage 3.769
SRR8316896Juvenile bud stage 4.538
SRR8316897Juvenile bud stage 1.251
SRR8316894Third green stage 2.171
SRR8316900Third green stage 6.476
SRR8316901Third green stage 4.977
SRR8316898Complete white stage 1.893
SRR8316899Complete white stage 7.686
SRR8316903Complete white stage 3.585
SRR8316902Silver flowering stage0.153
SRR8316904Silver flowering stage1.835
SRR8316905Silver flowering stage0.529
SRR8316906Gold flowering stage 1.398
SRR8316907Gold flowering stage 0.842
SRR8316908Gold flowering stage 2.887
SRP132670SRR6706286Control0.967
SRR6706287Light intensity 50%1.792
SRR6706288Light intensity 20%1.512
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.819
CNS0095593Slightly white alabastrum(diploid) 20.923
CNS0095594Slightly white alabastrum(diploid) 31.506
CNS0095595Whole white alabastrum(diploid) 21.561
CNS0095596Whole white alabastrum(diploid) 30.379
CNS0095597Whole white alabastrum(diploid) 41.510
CNS0095598Silvery flower (diploied) 14.360
CNS0095599Silvery flower (diploied) 23.418
CNS0095600Silvery flower (diploied) 33.810
CNS0095601Golden flower (diploid) 13.789
CNS0095602Golden flower (diploid) 25.357
CNS0095603Golden flower (diploid) 35.040
CNS0095604Slightly white alabastrum(tetraploid) 12.275
CNS0095605Slightly white alabastrum(tetraploid) 21.216
CNS0095606Slightly white alabastrum(tetraploid) 37.790
CNS0095607Whole white alabastrum(tetraploid) 10.497
CNS0095608Whole white alabastrum(tetraploid) 20.528
CNS0095609Whole white alabastrum(tetraploid) 33.846
CNS0095610Silvery flower (tetraploid) 15.330
CNS0095611Silvery flower (tetraploid) 26.118
CNS0095612Silvery flower (tetraploid) 32.641
CNS0095613Golden flower (tetraploid) 12.185
CNS0095614Golden flower (tetraploid) 22.996
CNS0095615Golden flower (tetraploid) 31.210
CRA001975CRR073297Stem 11.508
CRR073298Stem 20.889
CRR073299Stem 30.431
CRR073300Leaf 12.909
CRR073301Leaf 21.025
CRR073302Leaf 30.673
CRR073303Juvenile bud 10.769
CRR073304Juvenile bud 20.452
CRR073305Juvenile bud 30.714
CRR073306Third green 10.000
CRR073307Third green 20.141
CRR073308Third green 30.188
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.096
CRR073314Silver flowering 30.267
CRR073315Gold flowering 10.048
CRR073316Gold flowering 20.995
CRR073317Gold flowering 30.463
CRR073318Tawny withering 10.524
CRR073319Tawny withering 20.601
CRR073320Tawny withering 31.113