Gene detail

Detail information of GWHGAAZE004279

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004293751.1	0	PREDICTED: lecithine-cholesterol acyltransferase-like 4-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q71N54\|LCAT4_ARATH	0	Lecithin-cholesterol acyltransferase-like 4
trEMBL	tr\|W9SSF9\|W9SSF9_9ROSA	0	Lecithine-cholesterol acyltransferase-like 4 {ECO:0000313\|EMBL:EXC24759.1}
TAIR10	AT4G19860.1	1E-145	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114434702	114444440	+
GWHAAZE00000001	mRNA	114434702	114444440	+
GWHAAZE00000001	exon	114434702	114434942	+
GWHAAZE00000001	exon	114436360	114436451	+
GWHAAZE00000001	exon	114437289	114437407	+
GWHAAZE00000001	exon	114441786	114441886	+
GWHAAZE00000001	exon	114442222	114442421	+
GWHAAZE00000001	exon	114442686	114442843	+
GWHAAZE00000001	exon	114442945	114442999	+
GWHAAZE00000001	exon	114443157	114443210	+
GWHAAZE00000001	exon	114444018	114444440	+
GWHAAZE00000001	CDS	114434702	114434942	+
GWHAAZE00000001	CDS	114436360	114436451	+
GWHAAZE00000001	CDS	114437289	114437407	+
GWHAAZE00000001	CDS	114441786	114441886	+
GWHAAZE00000001	CDS	114442222	114442421	+
GWHAAZE00000001	CDS	114442686	114442843	+
GWHAAZE00000001	CDS	114442945	114442999	+
GWHAAZE00000001	CDS	114443157	114443210	+
GWHAAZE00000001	CDS	114444018	114444440	+

Transcript Sequence
>GWHTAAZE004285 ATGGCAGTGTTGTTGGAGGACATCGCACAAGCTGTAGAGCTCTGGTTGAAGCGCATCAAGAAGCCAGACCCTTACGTGGACCCCAACCTTGACCCGGTCCTTTTAGTTCCTGGCATCGCCGGTTCTATTCTCAACGCCGTCGACAACGATACCAGTAAAGAAGAGCGTGTTTGGGTTCGTATTCTCGGAGCTGATCGCGAGTTCCGAACTAAACTATGGTCCCGTTTCGATCCTTCCACTGGTAAAACTGTGTCTTTTGATCCCAAAACAAATGTTATGGTCCCTCAAGACAGAAACGGGCTATATGCAATTGACAACTTGGATCCTGACATGGTCATTGGGGGTGATAGTGCATACTATTTTCATGAAATGATAGATGAAATGATCAGCTGGGGTTACAATGAGGGAAAGACGCTTTTTGGGTTTGGATATGATTTCCGTCAAAGCAACAGGTGCTCCTGGATATATAACATCGGCCCTCCTCAATGGAATGTCATTTGTAGATGGGTGGGAGCAGAACTTCTTTGTATCAAAATGGAGCATGCACCAGCTGGAGCTGAAATGTTTCAGCTGATTGAATGTCCATCGGTGTACGAACTTATGGCTTGCCCCGATTTTGCCTGGGAACATATTCCATTGTTGGAATTCTGGAGGGAAACTCATGACAGTGATGGAAACTCCATGGCAATGCTGGTGTCTTATCCCCCAATTGAAGCTATATCAATTCTTAAACAAGCTCTTTCAATTAACGCGGTCAACTATGAAGGTGTGAACATTCCTCTACCGTTCAACTTAGAAATCTTGAAGTGGGCTAATGAGACACGGAAGGTTTTATCTCGCGCTAAGGTCCCATCTCAAGTTAAATTCTACAATATATATGGGACTAACCTTGAGACGCCTCATAGTGTATGCTATGGAAGTGAGGATGCTCCTCTCACAGACTGTAAAGAATTACCATGTTACTGGGGGGACTACATATATGTTAACGGTGATGGGACAGTCCCGGTTGAATCTGCCAAGGCTGATGGGCTGAATGCAGAAGCGAGGGTGGGGGTACCGGGTGAGCACAGAGGAATCCTGCATGATAAACATGTGTTCCGAATTCTCAAGCATTGGCTGAAGGCTGATCACGACCCTTATTACAACCCTATAAACGACTATGTGATCTTACCCACTTGTTTCGAAATTGAAAAGCATAAGGAAAAAGGCCTGCAGATTACTTCACTCAAGGAGGAATGGGAACTTGTCAAAAATGACGACCAAGATAAAGAAGACGACGACAATAATAAGGCTAATTCCTCTGCTAAAAACCCTATGGTGGGTTCGATATCTGTTTCTAAACAGCAAGAAGAGGCTCACGCCACCATTATTGTTCACCCGCAAACTGAGGAGGGTATGCAGCACGTTGAACTGAATGCAGTCAGCATCTCTGCAGGTGCTTAA

Network for GWHGAAZE004279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02450.16	LCAT	96	150	1.30E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22389	LCAT3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008374	molecular_function	O-acyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.977
	SRR3591706	second leaf	36.472
	SRR3591707	mature leaf	76.533
	SRR3591708	Shoot apex	35.496
	SRR3591709	Stem	61.363
	SRR3591710	White floral bud	78.703
	SRR3591711	White flower	109.888
	SRR3591712	Green floral bud	44.470
	SRR3591713	Yellow flower	186.755
SRP173429	SRR8316895	Juvenile bud stage	37.351
	SRR8316896	Juvenile bud stage	47.035
	SRR8316897	Juvenile bud stage	26.905
	SRR8316894	Third green stage	16.391
	SRR8316900	Third green stage	43.887
	SRR8316901	Third green stage	50.338
	SRR8316898	Complete white stage	50.593
	SRR8316899	Complete white stage	118.318
	SRR8316903	Complete white stage	84.052
	SRR8316902	Silver flowering stage	39.272
	SRR8316904	Silver flowering stage	57.946
	SRR8316905	Silver flowering stage	34.394
	SRR8316906	Gold flowering stage	118.145
	SRR8316907	Gold flowering stage	98.418
	SRR8316908	Gold flowering stage	125.920
SRP132670	SRR6706286	Control	80.999
	SRR6706287	Light intensity 50%	77.936
	SRR6706288	Light intensity 20%	75.610
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.405
	CNS0095593	Slightly white alabastrum(diploid) 2	39.964
	CNS0095594	Slightly white alabastrum(diploid) 3	42.675
	CNS0095595	Whole white alabastrum(diploid) 2	38.783
	CNS0095596	Whole white alabastrum(diploid) 3	26.795
	CNS0095597	Whole white alabastrum(diploid) 4	45.353
	CNS0095598	Silvery flower (diploied) 1	116.359
	CNS0095599	Silvery flower (diploied) 2	101.818
	CNS0095600	Silvery flower (diploied) 3	177.959
	CNS0095601	Golden flower (diploid) 1	135.844
	CNS0095602	Golden flower (diploid) 2	196.052
	CNS0095603	Golden flower (diploid) 3	189.501
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.861
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.712
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.988
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.819
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.960
	CNS0095610	Silvery flower (tetraploid) 1	224.309
	CNS0095611	Silvery flower (tetraploid) 2	270.735
	CNS0095612	Silvery flower (tetraploid) 3	196.345
	CNS0095613	Golden flower (tetraploid) 1	212.779
	CNS0095614	Golden flower (tetraploid) 2	235.652
	CNS0095615	Golden flower (tetraploid) 3	358.063
CRA001975	CRR073297	Stem 1	68.080
	CRR073298	Stem 2	57.392
	CRR073299	Stem 3	56.495
	CRR073300	Leaf 1	61.030
	CRR073301	Leaf 2	54.006
	CRR073302	Leaf 3	43.939
	CRR073303	Juvenile bud 1	61.517
	CRR073304	Juvenile bud 2	57.298
	CRR073305	Juvenile bud 3	83.324
	CRR073306	Third green 1	44.108
	CRR073307	Third green 2	48.686
	CRR073308	Third green 3	48.828
	CRR073309	Second white 1	73.542
	CRR073310	Second white 2	72.620
	CRR073311	Second white 3	73.730
	CRR073312	Silver flowering 1	62.047
	CRR073313	Silver flowering 2	46.293
	CRR073314	Silver flowering 3	53.688
	CRR073315	Gold flowering 1	52.018
	CRR073316	Gold flowering 2	76.050
	CRR073317	Gold flowering 3	51.299
	CRR073318	Tawny withering 1	48.397
	CRR073319	Tawny withering 2	41.763
	CRR073320	Tawny withering 3	36.025