Gene detail

Detail information of GWHGAAZE004265

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009776526.1	0	PREDICTED: uncharacterized protein LOC104226273 [Nicotiana sylvestris]
trEMBL	tr\|M1BWF1\|M1BWF1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400054494}
TAIR10	AT4G19650.1	1E-169	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114199601	114201256	+
GWHAAZE00000001	mRNA	114199601	114201256	+
GWHAAZE00000001	exon	114199601	114201256	+
GWHAAZE00000001	CDS	114199601	114201256	+

Transcript Sequence
>GWHTAAZE004271 ATGAGAGTTCGATGCTTTCATTGCTCTGTACCTGGCCGAAACCCTGATATCTCTGTTGCTGGGTCATCAACTCACACACCAATTTCTATATCCGCCAACCGAATTTCCCGGCTTGCAAGGACCGAGGCACAAGGTGCTCTATTCGATTACTTGCATTGTACTCAAGGGTTCCACTTCACAGATGCAGAGCACGTTAGCAAGAACTCGCCACTATTTCTTCAACATTTGCTCTCCAAGGTCGATAATGAGCAAGATATATCGCGGGCTTTGACAAGGTTCTTTCGATACAATCCCATTAACGAGTTTGAACCTTTCTTCGAGAGTTTGGGTTTGACCCCATCTGAATATGCATCGCTTCTTCCTCGAAATTTGATGTTTTTAGGGGATGATGATGTCATGCTCGATAACTTCCATGTTCTTTGCTATTATGGGATTCCTCGAAGTAAGATTGGTAGAATGTACAAAGAAGCCAAAGAAATATTCGGATATGAATATGGGATATTGGTCATGAGACTTAGGGCTTACGAAGATTTAGGTTTGAGTAAACCCGCAGTTATTCGGCTTGTTTGTTGCTGCCCGTCTCTTCTGGTCGGTAGTGTAAACGACGAGTTCATTAGGATTCTTGAAACTTTGAAAGGATTAGGGTTTGACAAAGATTGGATCGGAGAGTATTTATCGGACAAAATCTCTTATAATTGGAAACGAATGCTTGACACGATGGTGTTTCTTACCGAAGTTGGTTACAGTGAAACGCAATTGGGGATTTTGTTCAAGACAAATCCTGTATTATTGTTTGAAGGTTCTGGGCAAAGGATCTATATACTGGTCGGTCGATTACTTAAATTGGGTCTTAAGATGAATGAAGTGTATGGTATTTTCTTCAACAGTCCTCAAATTTTATCACCAAAATGCACAAAAAATCTCTGGAAGGCTGTTTATTTCCTGTTTGAGATAGGAATGGAAACAGATTCCATTACAAAGATCATAAACAGCCATTTCCTTCTTCTTAGTTCACATTCTCTCAAAGGACCCAAGACTGTTTTGAAAAGCTTAAAGGTCAACAAATCTAGTTTATGTCAAATTATAAAAGACGATCCTTTGAAGTTGATTACTTATGGGTCCAAATCGAATATTATTGGCACCGAGCCTTGCATTTCCCAAAACCCAAGTAAATCCTTGGAGAAAACAACGTTTTTGTTAAGATTAGGCTACATTGAAAATTCAGATGAGATGGCGAAAGCCTTAAAGCAGTTTCGGGGGAGAGGGGACCAGTTACAGGAGAGGTTTGATTGTTTGGTGCAAGCTGGTTTGGACACCAACGTTGTATCAAACATGATCAAACAAGCCCCGCCGGTTCTAAACCAAAGCAAAGATGTACTTGAGAAAAAGATTGATTGTTTGAGGAACTGTTTAGGGTATCCATTGGATTCGATTGTGGCTTTTCCGTCGTTTTTATGTTACGATGTTGAGAGAATCAACCTTAGGTTTTCAATGTATGTATGGCTAAGGGAGAGAGGGAAAGTGAAGCCTATGCTATCCTTGAGCACACTCCTTGCTTGTTCAGATGCAAGATTTGTAAGATATTTTGTTGACATGCACCCGGAAGGTCCACAAATCTGGGAAAGTTTAAAAAATTCATTGGCTTCTTCAAGCTAA

Network for GWHGAAZE004265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	241	470	9.50E-19
PF02536.15	mTERF	422	525	3.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.135
	SRR3591706	second leaf	1.692
	SRR3591707	mature leaf	1.214
	SRR3591708	Shoot apex	3.385
	SRR3591709	Stem	1.685
	SRR3591710	White floral bud	1.725
	SRR3591711	White flower	3.658
	SRR3591712	Green floral bud	2.313
	SRR3591713	Yellow flower	1.885
SRP173429	SRR8316895	Juvenile bud stage	3.346
	SRR8316896	Juvenile bud stage	4.552
	SRR8316897	Juvenile bud stage	1.841
	SRR8316894	Third green stage	1.515
	SRR8316900	Third green stage	2.794
	SRR8316901	Third green stage	3.181
	SRR8316898	Complete white stage	1.284
	SRR8316899	Complete white stage	4.511
	SRR8316903	Complete white stage	1.240
	SRR8316902	Silver flowering stage	1.747
	SRR8316904	Silver flowering stage	2.031
	SRR8316905	Silver flowering stage	0.903
	SRR8316906	Gold flowering stage	2.690
	SRR8316907	Gold flowering stage	2.483
	SRR8316908	Gold flowering stage	1.775
SRP132670	SRR6706286	Control	1.497
	SRR6706287	Light intensity 50%	1.863
	SRR6706288	Light intensity 20%	1.862
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.546
	CNS0095593	Slightly white alabastrum(diploid) 2	1.947
	CNS0095594	Slightly white alabastrum(diploid) 3	2.766
	CNS0095595	Whole white alabastrum(diploid) 2	1.687
	CNS0095596	Whole white alabastrum(diploid) 3	1.077
	CNS0095597	Whole white alabastrum(diploid) 4	1.983
	CNS0095598	Silvery flower (diploied) 1	1.671
	CNS0095599	Silvery flower (diploied) 2	4.030
	CNS0095600	Silvery flower (diploied) 3	3.134
	CNS0095601	Golden flower (diploid) 1	3.024
	CNS0095602	Golden flower (diploid) 2	2.635
	CNS0095603	Golden flower (diploid) 3	2.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.110
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.831
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.199
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.199
	CNS0095610	Silvery flower (tetraploid) 1	3.314
	CNS0095611	Silvery flower (tetraploid) 2	4.041
	CNS0095612	Silvery flower (tetraploid) 3	5.244
	CNS0095613	Golden flower (tetraploid) 1	2.686
	CNS0095614	Golden flower (tetraploid) 2	3.470
	CNS0095615	Golden flower (tetraploid) 3	1.749
CRA001975	CRR073297	Stem 1	1.450
	CRR073298	Stem 2	0.879
	CRR073299	Stem 3	1.122
	CRR073300	Leaf 1	1.410
	CRR073301	Leaf 2	0.869
	CRR073302	Leaf 3	0.717
	CRR073303	Juvenile bud 1	0.697
	CRR073304	Juvenile bud 2	0.967
	CRR073305	Juvenile bud 3	1.419
	CRR073306	Third green 1	0.548
	CRR073307	Third green 2	0.517
	CRR073308	Third green 3	0.613
	CRR073309	Second white 1	1.967
	CRR073310	Second white 2	0.967
	CRR073311	Second white 3	1.938
	CRR073312	Silver flowering 1	0.978
	CRR073313	Silver flowering 2	0.548
	CRR073314	Silver flowering 3	0.298
	CRR073315	Gold flowering 1	1.013
	CRR073316	Gold flowering 2	1.155
	CRR073317	Gold flowering 3	2.140
	CRR073318	Tawny withering 1	1.351
	CRR073319	Tawny withering 2	1.194
	CRR073320	Tawny withering 3	1.642