Gene detail

Detail information of GWHGAAZE004247

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGC27311.1	7.695E-144	NAC domain protein 8 [Gossypium hirsutum]
Swissprot	tr\|Q9FLJ2\|NC100_ARATH	3E-101	NAC domain-containing protein 100
trEMBL	tr\|U5IJP4\|U5IJP4_GOSHI	3E-144	NAC domain protein 8 {ECO:0000313\|EMBL:AGC27311.1}
TAIR10	AT5G18270.1	7E-96	Arabidopsis NAC domain containing protein 87

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113922108	113924302	-
GWHAAZE00000001	mRNA	113922108	113924302	-
GWHAAZE00000001	exon	113922108	113922689	-
GWHAAZE00000001	exon	113923465	113923745	-
GWHAAZE00000001	exon	113924092	113924302	-
GWHAAZE00000001	CDS	113924092	113924302	-
GWHAAZE00000001	CDS	113923465	113923745	-
GWHAAZE00000001	CDS	113922108	113922689	-

Transcript Sequence
>GWHTAAZE004253 TTCGGGTATTTTCTTTTAATGGAAGGGGCAGCTGTAGTTGTTAACGACGGGGACCACGATCTCATGGATTTGCCGCCAGGATTCAGATTCCATCCGACTGATGAAGAAATCATTACTCATTATCTTACAGAAAAAGTTACCAACAGCAACTTCAGCGCTAAAGCTATTGGCGAAGCTGATCTGAACAAGTGCGAACCATGGGATCTACCCAAGAAAGCGAAAATGGGGGAGAAGGAATGGTTTTTCTTCTGCCAGAGAGACAGAAAGTACCCGACGGGGATGAGAACGAACCGGGCAACAGAATCGGGTTACTGGAAGGCTACCGGAAAAGATAAGGAGATATACAAGGGAAAAGGGAGGCTTGTTGGGATGAAGAAAACACTTGTTTTCTACAGAGGAAGAGCTCCTAAAGGAGAAAAAACTAATTGGGTCATGCATGAATTTAGACTGGAAGGGAAATTCTCATACTATAATCTACCTAAGTCAGCAAAGGATGAATGGGTTGTATGCAGGGTCTTCCACAAGAACAACACCGCATTCAAGAGAAACTCAATGACAGATCTACTAAGAATGAACTCTTTTGTAGACAACCTGTTTGATGAAAGTCCTTCACTCCCACCTCTCATGGATCCTCCTAATAATAATTACTCAAACGCCGACGCACCAAGCTCAAGCTTTTCCAATATTAACAGCGAAGAGGAATTCAAGAACTTCTTTATCAACCCAAATAACTTCGCTTTCAATCCCACTAATTACCAACCTAATCAGAGTAACCAAACACCAAACCCCATTTTCTACTCGCAATTCCCATATCCAAACACCAACTTTCCTAATTACCAAGCCTCATCTTCAAGTATGGGAAATTATTTGGACAAAGAAAGAATTGGATCAATCTTCCAGCCTAATAATCTGGATCAATGCAAAGTTGAGCAATTTTCATCAAATCAATCTATGGTTAGCCTCTCGCAGGATACTGGACTTAGCACTGACGTAAATGCGGAGATATCGTCCAAACAGGACATGGGCGCTTCTGTTGGTCCGCTCTCGGATTTGGAGTCTATGTGGAATTTCTGA

Network for GWHGAAZE004247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	25	150	2.80E-40

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.411
	SRR3591706	second leaf	5.183
	SRR3591707	mature leaf	2.365
	SRR3591708	Shoot apex	7.218
	SRR3591709	Stem	27.468
	SRR3591710	White floral bud	21.405
	SRR3591711	White flower	81.138
	SRR3591712	Green floral bud	8.683
	SRR3591713	Yellow flower	115.005
SRP173429	SRR8316895	Juvenile bud stage	3.215
	SRR8316896	Juvenile bud stage	3.863
	SRR8316897	Juvenile bud stage	2.443
	SRR8316894	Third green stage	1.276
	SRR8316900	Third green stage	2.022
	SRR8316901	Third green stage	2.978
	SRR8316898	Complete white stage	1.874
	SRR8316899	Complete white stage	6.858
	SRR8316903	Complete white stage	2.730
	SRR8316902	Silver flowering stage	9.550
	SRR8316904	Silver flowering stage	10.360
	SRR8316905	Silver flowering stage	5.489
	SRR8316906	Gold flowering stage	31.724
	SRR8316907	Gold flowering stage	23.487
	SRR8316908	Gold flowering stage	25.305
SRP132670	SRR6706286	Control	4.433
	SRR6706287	Light intensity 50%	4.231
	SRR6706288	Light intensity 20%	2.980
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.347
	CNS0095593	Slightly white alabastrum(diploid) 2	5.705
	CNS0095594	Slightly white alabastrum(diploid) 3	10.179
	CNS0095595	Whole white alabastrum(diploid) 2	3.561
	CNS0095596	Whole white alabastrum(diploid) 3	1.072
	CNS0095597	Whole white alabastrum(diploid) 4	2.682
	CNS0095598	Silvery flower (diploied) 1	19.277
	CNS0095599	Silvery flower (diploied) 2	10.084
	CNS0095600	Silvery flower (diploied) 3	17.789
	CNS0095601	Golden flower (diploid) 1	11.080
	CNS0095602	Golden flower (diploid) 2	34.520
	CNS0095603	Golden flower (diploid) 3	29.850
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.567
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.103
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.197
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.233
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.486
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.592
	CNS0095610	Silvery flower (tetraploid) 1	16.686
	CNS0095611	Silvery flower (tetraploid) 2	9.710
	CNS0095612	Silvery flower (tetraploid) 3	19.140
	CNS0095613	Golden flower (tetraploid) 1	31.410
	CNS0095614	Golden flower (tetraploid) 2	26.663
	CNS0095615	Golden flower (tetraploid) 3	42.075
CRA001975	CRR073297	Stem 1	1.886
	CRR073298	Stem 2	1.741
	CRR073299	Stem 3	1.599
	CRR073300	Leaf 1	2.149
	CRR073301	Leaf 2	4.095
	CRR073302	Leaf 3	0.929
	CRR073303	Juvenile bud 1	1.595
	CRR073304	Juvenile bud 2	3.190
	CRR073305	Juvenile bud 3	2.318
	CRR073306	Third green 1	4.953
	CRR073307	Third green 2	4.786
	CRR073308	Third green 3	5.422
	CRR073309	Second white 1	16.558
	CRR073310	Second white 2	27.402
	CRR073311	Second white 3	29.572
	CRR073312	Silver flowering 1	53.409
	CRR073313	Silver flowering 2	51.603
	CRR073314	Silver flowering 3	53.676
	CRR073315	Gold flowering 1	1.986
	CRR073316	Gold flowering 2	3.399
	CRR073317	Gold flowering 3	1.239
	CRR073318	Tawny withering 1	23.062
	CRR073319	Tawny withering 2	38.041
	CRR073320	Tawny withering 3	30.893