Gene detail

Detail information of GWHGAAZE004243

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008449903.1	0	PREDICTED: pyruvate kinase, cytosolic isozyme [Cucumis melo]
COG	YP_002508078.1	4E-135	pyruvate kinase
Swissprot	tr\|Q42954\|KPYC_TOBAC	0	Pyruvate kinase, cytosolic isozyme
trEMBL	tr\|A5BD69\|A5BD69_VITVI	0	Pyruvate kinase {ECO:0000256\|RuleBase:RU000504}
TAIR10	AT5G56350.1	0	Pyruvate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113827274	113831362	+
GWHAAZE00000001	mRNA	113827274	113831362	+
GWHAAZE00000001	exon	113827274	113827573	+
GWHAAZE00000001	exon	113828218	113828256	+
GWHAAZE00000001	exon	113829972	113830433	+
GWHAAZE00000001	exon	113830565	113831362	+
GWHAAZE00000001	CDS	113827274	113827573	+
GWHAAZE00000001	CDS	113828218	113828256	+
GWHAAZE00000001	CDS	113829972	113830433	+
GWHAAZE00000001	CDS	113830565	113831362	+

Transcript Sequence
>GWHTAAZE004249 ATGGCTCTTTATGCAAATCTCTTTCCGAATATGTGTAATGGTTGCGTTAATGGAATGGAGAATGGAAATTTGAGGGATGAAGTCGAGAGTAAGAAGAGACCAAAGACGAAGATAGTTTGCACGTTGGGACCGGCGTCGAGGTCGGTGGAGATGATTGAGAAGTTGCTTATTGCCGGCATGAATGTTGCTCGGTTCAACTTCTCCCATGGCTCTCACGACTATCATCAGGAAACTCTTAACAATCTCCGTACTGCCGTTAAGAATACCGGCATTCTCTGTGCCGTCATGTTGGACACCAAGCGGGCTGTGAAGGCTGTGGTAAGGAGAGGTGGGGTGGAGGGACCAGAGATACGAACCGGTTTCTTAAAGGATGGGAAGGCCATTGAACTCAAACAGGGTCGAGAGATTACAATCTCGACCGACTATAGTATAAAGGGCGATGAGAATATGATCTCAATGAGCTACAAAAGGCTAGCTGAGGACTTGAAGCCACAAAGTGTGATTTTGTGTGCTGATGGAACGATTACACTCAAGGTTCTTTCTTGTGACAAGGAACGAGGATCGGTCAGATGTCTTTGTGAAAACTCTGCATTCCTTGGAGAGAAAAAGAACGTCAATCTTCCCGGTGTTGTTGTGGATCTACCAACATTGACTGAAAAGGACAAAGTGGATATCTTAGAGTGGGGGATCCCTAACAAAATCGACATGATTGCTTTGTCCTTTGTTCGCAAAGGTTCGGATCTTATTGAGGTTCGGAAGCTACTGGGAGAGCACACGAAGACAATTCTCCTCATGTCAAAGGTTGAAAATCAAGAAGGGGTGTCTAATTTTGATGACATTCTTGCAAATTCGGATGCTTTTATGGTGGCTCGAGGTGATTTAGGAATGGAGATCCCAATCGAGAAGATATTTCTAGCCCAAAAAGTGATGATCCACAAGTGCAACGAGCAGGGGAAGCCAGTGGTGACCGCAACCCAGATGTTAGAGTCAATGATCAAATCTCCCCGGCCCACTCGAGCCGAAGCCACTGATGTGGCCAATGCAGTCATTGATGGGACCGACTGTGTGATGCTTAGTGGGGAAACTGCAGCCGGGGCCTACCCAGAACAAGCCGTTCAAACCATGGCCAAGATTTGCATTGAAGCCGAGGATTCTTTGAACTATAGGGATGTTTTCAAAAGAATAATGGAGACTGCACCAATGCCAATGAACCCATTGGAGAGCTTGGCCTGTGCGGCGGTCCACACAGCCATTTCTTCGAAAGCATCCCTAATATTGGTTATAACCAAGGGTGGAAGCACTACAAAGATGGTGTCCAAGTACAGGCCAAGTATGGCGATTTTATCTGTGGTGGTGCCTGATGAGGTAGAAACAGATTACTCTTCTGATAAGTTTGAATCTGCAGCAAGGCACGGGCTTATATTGCGTGGGGTGGTGCCTATTGTATCTACTAAAGCTTGTTCTACAGATTCGGTAGAAGTGGCGATTGCGTTTGCTATTCAACACGCAAAGGCTCGACAGCTTTGCAAGACTGGAGACTCAGTCGTGGTGTTGCACCGTGATGGGACTGGTACAATCAAGATTGTCACTGTCTATTGA

Network for GWHGAAZE004243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.22	PK	35	391	5.70E-148
PF02887.17	PK_C	407	528	1.00E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004743	molecular_function	pyruvate kinase activity
GO:0003824	molecular_function	catalytic activity
GO:0000287	molecular_function	magnesium ion binding
GO:0030955	molecular_function	potassium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.709
	SRR3591706	second leaf	1.758
	SRR3591707	mature leaf	1.695
	SRR3591708	Shoot apex	1.675
	SRR3591709	Stem	11.084
	SRR3591710	White floral bud	0.856
	SRR3591711	White flower	2.510
	SRR3591712	Green floral bud	2.062
	SRR3591713	Yellow flower	0.614
SRP173429	SRR8316895	Juvenile bud stage	1.982
	SRR8316896	Juvenile bud stage	3.105
	SRR8316897	Juvenile bud stage	0.593
	SRR8316894	Third green stage	0.781
	SRR8316900	Third green stage	0.861
	SRR8316901	Third green stage	1.246
	SRR8316898	Complete white stage	0.067
	SRR8316899	Complete white stage	1.145
	SRR8316903	Complete white stage	0.148
	SRR8316902	Silver flowering stage	1.601
	SRR8316904	Silver flowering stage	1.721
	SRR8316905	Silver flowering stage	0.341
	SRR8316906	Gold flowering stage	1.686
	SRR8316907	Gold flowering stage	1.506
	SRR8316908	Gold flowering stage	0.961
SRP132670	SRR6706286	Control	0.706
	SRR6706287	Light intensity 50%	0.720
	SRR6706288	Light intensity 20%	0.601
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.680
	CNS0095593	Slightly white alabastrum(diploid) 2	1.616
	CNS0095594	Slightly white alabastrum(diploid) 3	0.963
	CNS0095595	Whole white alabastrum(diploid) 2	1.760
	CNS0095596	Whole white alabastrum(diploid) 3	0.494
	CNS0095597	Whole white alabastrum(diploid) 4	0.670
	CNS0095598	Silvery flower (diploied) 1	2.450
	CNS0095599	Silvery flower (diploied) 2	2.671
	CNS0095600	Silvery flower (diploied) 3	1.392
	CNS0095601	Golden flower (diploid) 1	0.711
	CNS0095602	Golden flower (diploid) 2	0.777
	CNS0095603	Golden flower (diploid) 3	1.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.675
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.932
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.619
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.217
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.267
	CNS0095610	Silvery flower (tetraploid) 1	0.635
	CNS0095611	Silvery flower (tetraploid) 2	0.384
	CNS0095612	Silvery flower (tetraploid) 3	0.275
	CNS0095613	Golden flower (tetraploid) 1	1.180
	CNS0095614	Golden flower (tetraploid) 2	0.159
	CNS0095615	Golden flower (tetraploid) 3	0.489
CRA001975	CRR073297	Stem 1	1.580
	CRR073298	Stem 2	1.297
	CRR073299	Stem 3	1.366
	CRR073300	Leaf 1	0.654
	CRR073301	Leaf 2	0.371
	CRR073302	Leaf 3	1.153
	CRR073303	Juvenile bud 1	0.838
	CRR073304	Juvenile bud 2	0.184
	CRR073305	Juvenile bud 3	0.933
	CRR073306	Third green 1	0.195
	CRR073307	Third green 2	0.153
	CRR073308	Third green 3	0.527
	CRR073309	Second white 1	1.165
	CRR073310	Second white 2	0.577
	CRR073311	Second white 3	2.198
	CRR073312	Silver flowering 1	2.713
	CRR073313	Silver flowering 2	1.588
	CRR073314	Silver flowering 3	2.340
	CRR073315	Gold flowering 1	1.658
	CRR073316	Gold flowering 2	0.888
	CRR073317	Gold flowering 3	1.586
	CRR073318	Tawny withering 1	8.487
	CRR073319	Tawny withering 2	13.332
	CRR073320	Tawny withering 3	6.037