Detail information of GWHGAAZE004227


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006574760.17.0083E-127PREDICTED: eukaryotic translation initiation factor NCBP-like isoform X2 [Glycine max]
Swissprottr|A3RCV9|IF4E3_WHEAT8E-117Eukaryotic translation initiation factor NCBP
trEMBLtr|I1JD60|I1JD60_SOYBN3E-127Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G08010.1}
TAIR10AT5G18110.19E-89novel cap-binding protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene113593852113595789-
GWHAAZE00000001mRNA113593852113595789-
GWHAAZE00000001exon113593852113593983-
GWHAAZE00000001exon113594082113594201-
GWHAAZE00000001exon113595201113595278-
GWHAAZE00000001exon113595414113595518-
GWHAAZE00000001exon113595658113595789-
GWHAAZE00000001CDS113595658113595789-
GWHAAZE00000001CDS113595414113595518-
GWHAAZE00000001CDS113595201113595278-
GWHAAZE00000001CDS113594082113594201-
GWHAAZE00000001CDS113593852113593983-
Transcript Sequence

Network for GWHGAAZE004227

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01652.19IF4E111681.20E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03259EIF4E RNA transport map03013
HIF-1 signaling pathwaymap04066
PI3K-Akt signaling pathwaymap04151
mTOR signaling pathwaymap04150
Insulin signaling pathwaymap04910
Longevity regulating pathwaymap04211

Gene Ontology

GO term OntologyName
GO:0006413biological_processtranslational initiation
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.735
SRR3591706second leaf31.643
SRR3591707mature leaf43.065
SRR3591708Shoot apex64.046
SRR3591709Stem60.089
SRR3591710White floral bud66.387
SRR3591711White flower97.984
SRR3591712Green floral bud67.211
SRR3591713Yellow flower82.360
SRP173429 SRR8316895Juvenile bud stage 50.687
SRR8316896Juvenile bud stage 71.430
SRR8316897Juvenile bud stage 44.962
SRR8316894Third green stage 28.027
SRR8316900Third green stage 83.040
SRR8316901Third green stage 79.691
SRR8316898Complete white stage 40.712
SRR8316899Complete white stage 122.187
SRR8316903Complete white stage 59.188
SRR8316902Silver flowering stage57.424
SRR8316904Silver flowering stage54.497
SRR8316905Silver flowering stage26.448
SRR8316906Gold flowering stage 96.457
SRR8316907Gold flowering stage 92.533
SRR8316908Gold flowering stage 113.918
SRP132670SRR6706286Control54.279
SRR6706287Light intensity 50%53.114
SRR6706288Light intensity 20%62.305
CNP0000432CNS0095592Slightly white alabastrum(diploid) 186.833
CNS0095593Slightly white alabastrum(diploid) 290.315
CNS0095594Slightly white alabastrum(diploid) 387.352
CNS0095595Whole white alabastrum(diploid) 268.199
CNS0095596Whole white alabastrum(diploid) 363.373
CNS0095597Whole white alabastrum(diploid) 448.248
CNS0095598Silvery flower (diploied) 175.888
CNS0095599Silvery flower (diploied) 280.373
CNS0095600Silvery flower (diploied) 3101.986
CNS0095601Golden flower (diploid) 176.570
CNS0095602Golden flower (diploid) 290.782
CNS0095603Golden flower (diploid) 388.839
CNS0095604Slightly white alabastrum(tetraploid) 160.458
CNS0095605Slightly white alabastrum(tetraploid) 270.818
CNS0095606Slightly white alabastrum(tetraploid) 373.618
CNS0095607Whole white alabastrum(tetraploid) 150.419
CNS0095608Whole white alabastrum(tetraploid) 249.842
CNS0095609Whole white alabastrum(tetraploid) 358.373
CNS0095610Silvery flower (tetraploid) 184.843
CNS0095611Silvery flower (tetraploid) 277.856
CNS0095612Silvery flower (tetraploid) 372.628
CNS0095613Golden flower (tetraploid) 167.971
CNS0095614Golden flower (tetraploid) 277.623
CNS0095615Golden flower (tetraploid) 383.486
CRA001975CRR073297Stem 176.948
CRR073298Stem 268.065
CRR073299Stem 398.699
CRR073300Leaf 175.286
CRR073301Leaf 280.418
CRR073302Leaf 383.670
CRR073303Juvenile bud 196.246
CRR073304Juvenile bud 277.298
CRR073305Juvenile bud 374.888
CRR073306Third green 151.520
CRR073307Third green 255.785
CRR073308Third green 355.082
CRR073309Second white 151.748
CRR073310Second white 261.956
CRR073311Second white 348.188
CRR073312Silver flowering 158.667
CRR073313Silver flowering 255.761
CRR073314Silver flowering 368.557
CRR073315Gold flowering 167.017
CRR073316Gold flowering 263.487
CRR073317Gold flowering 342.638
CRR073318Tawny withering 1102.969
CRR073319Tawny withering 2107.854
CRR073320Tawny withering 3100.000