Detail information of GWHGAAZE004208


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006470820.10PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Citrus sinensis]
COGYP_166300.12E-27DNA methylase, C-5 cytosine-specific family
Swissprottr|O49139|CMT1_ARATH0Putative DNA (cytosine-5)-methyltransferase CMT1
trEMBLtr|D7TIB5|D7TIB5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI29991.3}
TAIR10AT1G80740.19E-177chromomethylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene113277457113288129-
GWHAAZE00000001mRNA113277457113288129-
GWHAAZE00000001exon113277457113277631-
GWHAAZE00000001exon113278725113278828-
GWHAAZE00000001exon113278926113278995-
GWHAAZE00000001exon113279081113279124-
GWHAAZE00000001exon113279445113279549-
GWHAAZE00000001exon113280718113280804-
GWHAAZE00000001exon113281198113281266-
GWHAAZE00000001exon113282450113282770-
GWHAAZE00000001exon113282866113282932-
GWHAAZE00000001exon113283023113283081-
GWHAAZE00000001exon113283271113283513-
GWHAAZE00000001exon113283608113283673-
GWHAAZE00000001exon113283792113284009-
GWHAAZE00000001exon113284230113284326-
GWHAAZE00000001exon113284536113284655-
GWHAAZE00000001exon113284729113284836-
GWHAAZE00000001exon113287882113287984-
GWHAAZE00000001exon113288068113288129-
GWHAAZE00000001CDS113288068113288129-
GWHAAZE00000001CDS113287882113287984-
GWHAAZE00000001CDS113284729113284836-
GWHAAZE00000001CDS113284536113284655-
GWHAAZE00000001CDS113284230113284326-
GWHAAZE00000001CDS113283792113284009-
GWHAAZE00000001CDS113283608113283673-
GWHAAZE00000001CDS113283271113283513-
GWHAAZE00000001CDS113283023113283081-
GWHAAZE00000001CDS113282866113282932-
GWHAAZE00000001CDS113282450113282770-
GWHAAZE00000001CDS113281198113281266-
GWHAAZE00000001CDS113280718113280804-
GWHAAZE00000001CDS113279445113279549-
GWHAAZE00000001CDS113279081113279124-
GWHAAZE00000001CDS113278926113278995-
GWHAAZE00000001CDS113278725113278828-
GWHAAZE00000001CDS113277457113277631-
Transcript Sequence

Network for GWHGAAZE004208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01426.19BAH541523.40E-10
PF00385.25Chromo3163711.40E-10
PF00145.18DNA_methylase3796688.90E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00558DNMT1, dcm Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0008168molecular_functionmethyltransferase activity
GO:0003682molecular_functionchromatin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.190
SRR3591706second leaf3.822
SRR3591707mature leaf0.467
SRR3591708Shoot apex60.830
SRR3591709Stem8.545
SRR3591710White floral bud1.701
SRR3591711White flower0.346
SRR3591712Green floral bud2.042
SRR3591713Yellow flower0.109
SRP173429 SRR8316895Juvenile bud stage 7.226
SRR8316896Juvenile bud stage 7.642
SRR8316897Juvenile bud stage 5.184
SRR8316894Third green stage 2.464
SRR8316900Third green stage 1.717
SRR8316901Third green stage 1.532
SRR8316898Complete white stage 0.132
SRR8316899Complete white stage 1.088
SRR8316903Complete white stage 0.499
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.147
SRR8316905Silver flowering stage0.061
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.113
SRR8316908Gold flowering stage 0.101
SRP132670SRR6706286Control1.438
SRR6706287Light intensity 50%1.728
SRR6706288Light intensity 20%1.907
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.495
CNS0095593Slightly white alabastrum(diploid) 25.052
CNS0095594Slightly white alabastrum(diploid) 34.084
CNS0095595Whole white alabastrum(diploid) 22.200
CNS0095596Whole white alabastrum(diploid) 31.420
CNS0095597Whole white alabastrum(diploid) 42.012
CNS0095598Silvery flower (diploied) 11.889
CNS0095599Silvery flower (diploied) 25.167
CNS0095600Silvery flower (diploied) 30.930
CNS0095601Golden flower (diploid) 11.126
CNS0095602Golden flower (diploid) 20.875
CNS0095603Golden flower (diploid) 30.595
CNS0095604Slightly white alabastrum(tetraploid) 14.660
CNS0095605Slightly white alabastrum(tetraploid) 23.402
CNS0095606Slightly white alabastrum(tetraploid) 38.788
CNS0095607Whole white alabastrum(tetraploid) 12.196
CNS0095608Whole white alabastrum(tetraploid) 20.932
CNS0095609Whole white alabastrum(tetraploid) 31.826
CNS0095610Silvery flower (tetraploid) 10.318
CNS0095611Silvery flower (tetraploid) 20.377
CNS0095612Silvery flower (tetraploid) 30.299
CNS0095613Golden flower (tetraploid) 10.070
CNS0095614Golden flower (tetraploid) 20.131
CNS0095615Golden flower (tetraploid) 30.021
CRA001975CRR073297Stem 17.378
CRR073298Stem 26.405
CRR073299Stem 37.164
CRR073300Leaf 11.657
CRR073301Leaf 21.375
CRR073302Leaf 30.737
CRR073303Juvenile bud 10.890
CRR073304Juvenile bud 20.302
CRR073305Juvenile bud 30.648
CRR073306Third green 10.071
CRR073307Third green 20.000
CRR073308Third green 30.084
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.365
CRR073316Gold flowering 20.156
CRR073317Gold flowering 30.080
CRR073318Tawny withering 110.817
CRR073319Tawny withering 27.396
CRR073320Tawny withering 39.467