Gene detail

Detail information of GWHGAAZE004157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284560.2	0	PREDICTED: cytokinin dehydrogenase 1-like [Vitis vinifera]
COG	YP_007093170.1	1E-73	FAD linked oxidase domain-containing protein
Swissprot	tr\|O22213\|CKX1_ARATH	0	Cytokinin dehydrogenase 1 (Precursor)
trEMBL	tr\|D7TSA7\|D7TSA7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33379.3}
TAIR10	AT2G41510.1	5E-159	cytokinin oxidase/dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112383228	112385578	+
GWHAAZE00000001	mRNA	112383228	112385578	+
GWHAAZE00000001	exon	112383228	112383891	+
GWHAAZE00000001	exon	112384438	112384565	+
GWHAAZE00000001	exon	112384692	112384952	+
GWHAAZE00000001	exon	112385309	112385578	+
GWHAAZE00000001	CDS	112383228	112383891	+
GWHAAZE00000001	CDS	112384438	112384565	+
GWHAAZE00000001	CDS	112384692	112384952	+
GWHAAZE00000001	CDS	112385309	112385578	+

Transcript Sequence
>GWHTAAZE004163 ATGAACTCGCCACTTCATGGTCTGCTCAAACAAAAGAACGCAGTCATCAGATTTCTTATGGTCTTTTTGTTGACTTCTAATATCAATAAAAACAAACATTGTTGTTTTAACCACCTTTCTGCCACCCCTACAGAGTCTCCTCGTTCAAACTCCTCACTTATCCCTTCATCATTAGAGGTACTAAGGCTTGGAGGCCAACTTAGCCTTGATGACATCCACCAAGCAGCCAATGACTTCGGCAATATAATCCATCTTCTCCCATCAGCAGTTATACATCCAAAATCAGTTTCTGATATTTCAAACATCATAAAAAACATTTTTAATATGGGTCCCACATCGGGACTCACTGTTGCCGCTAGAGGCCATGGACACTCCCTTCAAGGTCAAGCACAAGCTGATCAAGGAGTGGTTATCACCATGGAATCACTTCAGGGACCAAAAATGTACTTTCACACTGAAGACATGCCTTATGTGGAAGTGTCTGGTGGTGAGCTGTGGATAAATATTCTGAATGAGAGTCTTAAACACGGGCTTTCACCGAAATCTTGGACAGATTATCTGTATCTCACTGTCGGAGGTACTTTATCAAATGCCGGAATCAGTGGGCAAGCTTTTAAATACGGACCCCAGATCAATAACATCTACCAGCTAGAGGTTGTCACAGGGACAGGAGAGGTGGTAACCTGTTCAGACAAGCAAAACGCAGACCTTTTTTATGGTGTTCTTGGGGGACTGGGGCAGTTTGGTATCATCACCCGGGCTAGAATCTCTCTCGAACCAGCACCCAAGATGGTGAAATGGATTAGAGTGTTGTACTCGGACTTTGCCGTATTTACCAAGGACCAAGAGCATCTAATATCATCCAAGGATTCTTTTGACTATATTGAAGGATTCGTCCTAATAAACAGAACCGGTCTGCTTAATAACTGGAGATCTTCGTTCAATCCCAAAGACCCACTTGAAGCCAGCCTGTTCAACTCCGAAGGAAAAACTCTCTTCTGTCTGGAAGTAGCAAAGTACTTCAACCCAAAAGAGATTGTTAGTGCGAACCAGAAAGTTCGCAGCTTATTGTCCGAGTTGAATTATATTCAATCAACTCTCTTCCAATCAGAAGTCTCATACATGGATTTCCTGAATAGAGTGCATGTTTCAGAGATAAAACTACGGAAAAAGGGGTTGTGGGAGGTTCCTCACCCATGGTTAAACCTTCTGATACCCAAAAGCAGAATTCACGACTTTGCCCAAGAGGTTTTCGGAAAGATTATTACAGACACTAGCAGTGGTCCTCTACTTATCTACCCAGTTAACAAATCCAGGTACTAG

Network for GWHGAAZE004157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	87	230	2.70E-20
PF09265.11	Cytokin-bind	262	440	8.70E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009690	biological_process	cytokinin metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0019139	molecular_function	cytokinin dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.217
	SRR3591706	second leaf	0.163
	SRR3591707	mature leaf	0.488
	SRR3591708	Shoot apex	0.298
	SRR3591709	Stem	0.422
	SRR3591710	White floral bud	5.879
	SRR3591711	White flower	1.246
	SRR3591712	Green floral bud	6.679
	SRR3591713	Yellow flower	0.334
SRP173429	SRR8316895	Juvenile bud stage	0.267
	SRR8316896	Juvenile bud stage	0.733
	SRR8316897	Juvenile bud stage	0.380
	SRR8316894	Third green stage	0.447
	SRR8316900	Third green stage	3.175
	SRR8316901	Third green stage	1.324
	SRR8316898	Complete white stage	0.317
	SRR8316899	Complete white stage	1.014
	SRR8316903	Complete white stage	0.266
	SRR8316902	Silver flowering stage	0.057
	SRR8316904	Silver flowering stage	0.302
	SRR8316905	Silver flowering stage	0.094
	SRR8316906	Gold flowering stage	0.139
	SRR8316907	Gold flowering stage	0.064
	SRR8316908	Gold flowering stage	0.093
SRP132670	SRR6706286	Control	9.321
	SRR6706287	Light intensity 50%	7.783
	SRR6706288	Light intensity 20%	8.754
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.033
	CNS0095593	Slightly white alabastrum(diploid) 2	0.449
	CNS0095594	Slightly white alabastrum(diploid) 3	0.091
	CNS0095595	Whole white alabastrum(diploid) 2	0.715
	CNS0095596	Whole white alabastrum(diploid) 3	0.336
	CNS0095597	Whole white alabastrum(diploid) 4	0.257
	CNS0095598	Silvery flower (diploied) 1	0.667
	CNS0095599	Silvery flower (diploied) 2	0.336
	CNS0095600	Silvery flower (diploied) 3	0.768
	CNS0095601	Golden flower (diploid) 1	0.051
	CNS0095602	Golden flower (diploid) 2	0.821
	CNS0095603	Golden flower (diploid) 3	0.531
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.340
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.204
	CNS0095610	Silvery flower (tetraploid) 1	0.378
	CNS0095611	Silvery flower (tetraploid) 2	0.524
	CNS0095612	Silvery flower (tetraploid) 3	0.415
	CNS0095613	Golden flower (tetraploid) 1	0.441
	CNS0095614	Golden flower (tetraploid) 2	0.362
	CNS0095615	Golden flower (tetraploid) 3	0.333
CRA001975	CRR073297	Stem 1	0.383
	CRR073298	Stem 2	0.415
	CRR073299	Stem 3	0.032
	CRR073300	Leaf 1	1.178
	CRR073301	Leaf 2	0.517
	CRR073302	Leaf 3	0.688
	CRR073303	Juvenile bud 1	0.305
	CRR073304	Juvenile bud 2	0.292
	CRR073305	Juvenile bud 3	0.236
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.053
	CRR073317	Gold flowering 3	0.064
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.236
	CRR073320	Tawny withering 3	0.001