Gene detail

Detail information of GWHGAAZE004144

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACQ90682.1	6.11346E-31	geranyl diphosphate synthase large subunit [Humulus lupulus]
COG	YP_001016949.1	2E-13	polyprenyl synthetase
Swissprot	tr\|Q94ID7\|GGPPS_HEVBR	4E-32	Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|C4NAM8\|C4NAM8_HUMLU	2E-31	Geranyl diphosphate synthase large subunit {ECO:0000313\|EMBL:ACQ90682.1}
TAIR10	AT4G36810.1	7E-21	geranylgeranyl pyrophosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112131093	112131486	+
GWHAAZE00000001	mRNA	112131093	112131486	+
GWHAAZE00000001	exon	112131093	112131097	+
GWHAAZE00000001	exon	112131165	112131486	+
GWHAAZE00000001	CDS	112131093	112131097	+
GWHAAZE00000001	CDS	112131165	112131486	+

Transcript Sequence
>GWHTAAZE004150 ATGAGCTATTTTAAAACAACCCTATTTATATAATTAAGCTCAAAAGTCCCCTATTTTACTAAATAAGTTTTAAAAAAAGCGTAGTTAAAAAAAAAAAAAAAAAGTCTACTTGACGTGACCAAGTCGTCCCAAGAATCGGGAAAGACGGCGGGGAAGGATTTGGCGTCTGACAAGGCCACGTATCCCAAGTTGATTGGTCCTGACAACTCACGATATTTTGCTGAGAAATTGAATTTGGAGGCTCAAGATCATATCGCGGGATTTGATCCACACAAGGCTTCTCCACTGATTGCTCTTGCCAATTACATTGCATATAGGAAAAACTGA

Network for GWHGAAZE004144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13789	GGPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.001
	CNS0095595	Whole white alabastrum(diploid) 2	0.001
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.001
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.004
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.002
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.001
	CRR073300	Leaf 1	0.001
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.003
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000