Gene detail

Detail information of GWHGAAZE004073

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU20790.1	3.1319E-167	hypothetical protein MIMGU_mgv1a011565mg [Erythranthe guttata]
COG	YP_003496506.1	3E-75	pyrroline-5-carboxylate reductase
Swissprot	tr\|O04016\|P5CR_ACTCH	2E-168	Pyrroline-5-carboxylate reductase
trEMBL	tr\|A0A022Q2N8\|A0A022Q2N8_ERYGU	1E-167	Pyrroline-5-carboxylate reductase {ECO:0000256\|RuleBase:RU003903}
TAIR10	AT5G14800.1	6E-116	pyrroline-5- carboxylate (P5C) reductase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	110563688	110572154	+
GWHAAZE00000001	mRNA	110563688	110572154	+
GWHAAZE00000001	exon	110563688	110563888	+
GWHAAZE00000001	exon	110565876	110565924	+
GWHAAZE00000001	exon	110567512	110567603	+
GWHAAZE00000001	exon	110568002	110568074	+
GWHAAZE00000001	exon	110569936	110570056	+
GWHAAZE00000001	exon	110570741	110570846	+
GWHAAZE00000001	exon	110571966	110572154	+
GWHAAZE00000001	CDS	110563688	110563888	+
GWHAAZE00000001	CDS	110565876	110565924	+
GWHAAZE00000001	CDS	110567512	110567603	+
GWHAAZE00000001	CDS	110568002	110568074	+
GWHAAZE00000001	CDS	110569936	110570056	+
GWHAAZE00000001	CDS	110570741	110570846	+
GWHAAZE00000001	CDS	110571966	110572154	+

Transcript Sequence
>GWHTAAZE004079 ATGGTCGGAGTTGTTCCCATTCCGAACGACACATACAATTTAGGGTTCATCGGAGCAGGCAAAATGGCGGAGAGTATCTCCAGAGGCGTCGTCAATTCCGGTGTATTGCCCGCTTCAAGGATTCGAACTGCTCACCTCGGGTCCGCCCGCAGGGAGGCTTTCGAATCCTTTGGCGTCAACGTTCTCCGTCAAAACAACGAGGTTGTAGAAAGCAGTGACGTGGTGATTTTCTCTGTGAAACCTCAAGTTGTTAAAGATGTGGTCTTGCAGTTGAAGCCAATACTTTCGGAAAAGAAGCTTTTAGTTTCAGTTGTTGCAGGTGTAAAGCTAAAAGATCTGCAGGAATGGGCTGGTCACAGCCGATTTATAAGGGTAATGCCAAACACTCCTGCTGCTGTAGGCAAGGCGGCATCAGTTATGAGCTTGGGCGCAGCTGCAACAGAACAAGATGGAGAACTAATAGCGAATTTATTTGGAGCAATTGGCAAAATTTGGAGAGCGGATGAGAAGCTATTTGATGCAATCACAGGCCTGAGTGGAAGTGGACCGGCTTATATGTTTTTAGCGATAGAAGCTTTGGCTGATGGGGGGGTAGCTGCAGGTCTACCTCGAGAACTTGCACTTGGTCTTGCCTCCCAAACTGTACTTGGAGCAGCATCTATGGCCTGCAACGCAGGGAAGCATCCAGGTCAGCTCAAAGATGATGTGGCATCGCCAGGTGGGACCACCATTGCTGGTATTCATGAGTTGGAGAAGGGTGGATTTCGAGGTATCTTGATGAATGCTGTAGTTGCTGCCGCTAAGCGCAGCCGAGAACTTTCCCAGAGTTAG

Network for GWHGAAZE004073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03807.18	F420_oxidored	14	107	6.90E-18
PF14748.7	P5CR_dimer	169	273	1.90E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00286	proC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006561	biological_process	proline biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004735	molecular_function	pyrroline-5-carboxylate reductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.676
	SRR3591706	second leaf	7.241
	SRR3591707	mature leaf	2.543
	SRR3591708	Shoot apex	9.173
	SRR3591709	Stem	2.468
	SRR3591710	White floral bud	5.783
	SRR3591711	White flower	5.803
	SRR3591712	Green floral bud	7.930
	SRR3591713	Yellow flower	5.557
SRP173429	SRR8316895	Juvenile bud stage	16.340
	SRR8316896	Juvenile bud stage	38.557
	SRR8316897	Juvenile bud stage	8.332
	SRR8316894	Third green stage	10.637
	SRR8316900	Third green stage	16.306
	SRR8316901	Third green stage	24.861
	SRR8316898	Complete white stage	2.233
	SRR8316899	Complete white stage	6.971
	SRR8316903	Complete white stage	3.045
	SRR8316902	Silver flowering stage	1.474
	SRR8316904	Silver flowering stage	2.554
	SRR8316905	Silver flowering stage	1.327
	SRR8316906	Gold flowering stage	3.153
	SRR8316907	Gold flowering stage	2.133
	SRR8316908	Gold flowering stage	3.303
SRP132670	SRR6706286	Control	12.517
	SRR6706287	Light intensity 50%	10.035
	SRR6706288	Light intensity 20%	11.890
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.087
	CNS0095593	Slightly white alabastrum(diploid) 2	19.613
	CNS0095594	Slightly white alabastrum(diploid) 3	38.204
	CNS0095595	Whole white alabastrum(diploid) 2	13.770
	CNS0095596	Whole white alabastrum(diploid) 3	19.132
	CNS0095597	Whole white alabastrum(diploid) 4	10.587
	CNS0095598	Silvery flower (diploied) 1	6.030
	CNS0095599	Silvery flower (diploied) 2	5.332
	CNS0095600	Silvery flower (diploied) 3	4.918
	CNS0095601	Golden flower (diploid) 1	4.272
	CNS0095602	Golden flower (diploid) 2	4.437
	CNS0095603	Golden flower (diploid) 3	4.849
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.528
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.590
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.759
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.751
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.778
	CNS0095610	Silvery flower (tetraploid) 1	6.488
	CNS0095611	Silvery flower (tetraploid) 2	4.706
	CNS0095612	Silvery flower (tetraploid) 3	2.058
	CNS0095613	Golden flower (tetraploid) 1	3.057
	CNS0095614	Golden flower (tetraploid) 2	5.328
	CNS0095615	Golden flower (tetraploid) 3	1.802
CRA001975	CRR073297	Stem 1	21.538
	CRR073298	Stem 2	24.058
	CRR073299	Stem 3	19.102
	CRR073300	Leaf 1	12.461
	CRR073301	Leaf 2	13.404
	CRR073302	Leaf 3	13.943
	CRR073303	Juvenile bud 1	4.613
	CRR073304	Juvenile bud 2	3.011
	CRR073305	Juvenile bud 3	4.221
	CRR073306	Third green 1	0.149
	CRR073307	Third green 2	0.876
	CRR073308	Third green 3	0.062
	CRR073309	Second white 1	0.153
	CRR073310	Second white 2	1.558
	CRR073311	Second white 3	0.260
	CRR073312	Silver flowering 1	0.217
	CRR073313	Silver flowering 2	0.463
	CRR073314	Silver flowering 3	0.618
	CRR073315	Gold flowering 1	2.420
	CRR073316	Gold flowering 2	3.331
	CRR073317	Gold flowering 3	3.443
	CRR073318	Tawny withering 1	4.294
	CRR073319	Tawny withering 2	1.656
	CRR073320	Tawny withering 3	3.982