Gene detail

Detail information of GWHGAAZE004069

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010653947.1	PREDICTED: condensin complex subunit 1 [Vitis vinifera]
trEMBL	tr\|F6HLQ7\|F6HLQ7_VITVI	Condensin complex subunit 1 {ECO:0000256\|PIRNR:PIRNR017127}
TAIR10	AT3G57060.2	binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	110469453	110481286	-
GWHAAZE00000001	mRNA	110469453	110481286	-
GWHAAZE00000001	exon	110469453	110469583	-
GWHAAZE00000001	exon	110469693	110469857	-
GWHAAZE00000001	exon	110470683	110470884	-
GWHAAZE00000001	exon	110470998	110471149	-
GWHAAZE00000001	exon	110471844	110471901	-
GWHAAZE00000001	exon	110471976	110472091	-
GWHAAZE00000001	exon	110473052	110473151	-
GWHAAZE00000001	exon	110473238	110473460	-
GWHAAZE00000001	exon	110473591	110473658	-
GWHAAZE00000001	exon	110474112	110474288	-
GWHAAZE00000001	exon	110474691	110475329	-
GWHAAZE00000001	exon	110477911	110478102	-
GWHAAZE00000001	exon	110478719	110479931	-
GWHAAZE00000001	exon	110480045	110480205	-
GWHAAZE00000001	exon	110480610	110480941	-
GWHAAZE00000001	exon	110481032	110481286	-
GWHAAZE00000001	five_prime_UTR	110481165	110481286	-
GWHAAZE00000001	CDS	110481032	110481164	-
GWHAAZE00000001	CDS	110480610	110480941	-
GWHAAZE00000001	CDS	110480045	110480205	-
GWHAAZE00000001	CDS	110478719	110479931	-
GWHAAZE00000001	CDS	110477911	110478102	-
GWHAAZE00000001	CDS	110474691	110475329	-
GWHAAZE00000001	CDS	110474112	110474288	-
GWHAAZE00000001	CDS	110473591	110473658	-
GWHAAZE00000001	CDS	110473238	110473460	-
GWHAAZE00000001	CDS	110473052	110473151	-
GWHAAZE00000001	CDS	110471976	110472091	-
GWHAAZE00000001	CDS	110471844	110471901	-
GWHAAZE00000001	CDS	110470998	110471149	-
GWHAAZE00000001	CDS	110470683	110470884	-
GWHAAZE00000001	CDS	110469693	110469857	-
GWHAAZE00000001	CDS	110469453	110469583	-

Transcript Sequence
>GWHTAAZE004075 TCTCTCTCAGGGCGAAGACCCGAATCTGATAGTCGTCAGTCTCTGAAATCAGAAGCTAAAATCTCATTTTCCATACTTCAATTTTTTCTCGCATTGCTCCATTTGAAGATTTCTCGCCTTCAATGGCTCCGCCCTTCATTTTCCCCCAAACTCTGCTGGCCCTTGAAGAAGACTACGAAGATGGCCGTCTCTCTGTCCAAAACCCTACCTTAATTCCTTCACTCCGCTCTTCAGAACTCGAAGAATTCGTCAAAGGTGTATCGTTTGATCTCTCAGACAAAGAGCTCTTCTGTGTGGAAGAGCAGGATGTGTTTGACAGGGTGTATTCGTTGGTCAAGGGTTTTGGCAGCCTTACTCCTGTTTGTAAGGTCAATCTCGTGGAGAGTATTAGATCCAATTTCAGTGTTTTGCTTCCCAATATCGATTCACTTTCACGAGTTTCTCAAGCTCAGGAGGACGATGGAGCTCCTCCGGTACTTGACCGGATTGCTTCTCATCGCAATGCATTCAAAATATACACATTCTTCCTCATTCATATTATCCTAGCTGAGGAGTCTAGCATTACTACTGCCACTAACAGTACTAAAGTGGCCATGAGTACTAGGAAGAAACAGCCTGTAAGTTCATGGAATTGGGAGCCCCAGCGGAGTCGGATCCTGAATTTGATTGCCAATTCACTTGAGATCACTCTCTCGTTGCTCTTTGGGTCATCAGATCCGGATGAAAATTATTTGTCCTTCATTGTGAAACACACTTTCTCTTTGTTTGAGAATGCTGCAATATTAAAAGATTCAGACACAAAAGATGCTTTATGTCGCATAACTGGAACATGCGCCACTAAATACCACTACATGGCACATTCTTGTGCTTCTATCCTTCACTTAATTCACAAATACGATTTTGTTGTTACCCACTTGGCTGATGCGGTGGCCGGGGCTGAAAAGAAGTATGCTGATGGAAGCCTGGCTACCTCCCTAGTTAGAGAGATCGGAAGGACTAACCCAAAAGACTATGTGAAAGACACCGTTGGAGCCGAAAATGTAGGCCGGTTTCTCGTGGAGCTTGCTGATCGTTTGCCAAAGTTGATTTCAACCAACATTGGTCTTTTGGTCCCACATTTTGGTGGAGAGTCCTATAAGATAAGGAATGCTCTTGTTGGCGTGTTGGGGAAATTGGTGGCAAAGGCCTTCAATGATGCTGAGGGTGAAATAAGTTCGAAATCCATTCGTCTTCGAACCAAGCAGGCCATGTTGGAAATCTTGCTAGAACGCTGTCGGGATGTTTCGGCTTATACTAGGAGTCGGGTTCTCCAAGTATGGGCTGAACTATGCGAAGAACATTCTGTTTCCATTGGTTTGTGGAACGAGGTTGTGGTAGTAGCTTCCGGTAGGTTGGAGGATAAGAGTGCAATAGTTAGAAAATCTGCACTGAATTTGCTTATAATGATGTTGCAGCATAATCCTTTCGGTCCGCAACTTCGTATAGCTTCTTTTGAAGCAACCTTGGAGCAGTACAAAAAGAAGTTAAACAATCTTGGACCAAATGCCCCATCAGAGAGTGTTTTGGAAGGGTTACCAACAGAAACCGATACTTGTACTGGAGATGGGGAGGTTGATCATGTAGATGATGCTGACACGGTGTCCAAGGAGCAGCAAGATGTTGGGGTTTTAGAGCAAGATAGTTTATCTGACAGCTGCTTACCTCATCCAGATGGTGGGAGTGCGCAGAAGGATAGTTCGGTTCCCGATATTGGGAACCTGGAGCAAACGAGGACCTTGGTTGCGTCACTTGAGGCTGGCTTGAGATTCTCAAAGTGCGTGTCGGCCACAATGCCGATCCTTGTTCAATTGATGGCTTCGTCTTCTGCTACTGATGTTGAGAATGCGATTTTATTGCTAATGAGGTGCAAACAGTTCCAAATTGATGGCTCAGAAGCTTCCCTGCGTAAGATGTTGCCACTGGTATTTTCCCAGGACAAATCCATTTATGAAGCTGTGGAAAATGCGTTCATTACAATTTATTTGAGGAAGAACCCAATAGAAACTGCTAAAAATCTTTTGAGTCTTGCGGTCGATTCAAACATTGGCGATCTCACGGCATTGGAGTTCATAGTTAGTGCCTTGGTATCCAAAGGCGACATAACCGCTTCCATGATATCAGCATTATGGGATTTCTTTTGTTTTAATGTTAATGGAACAACTGCAGAGCAAAGCCGTGGTGCTTTATCCCTCTTGTGCATGGCAGCAAAATCATCTGCTGGTGTTCTCAGCTCTCACCTACAAGACATTATTGACATAGGCTTTGGTCGTTGGGCAAAAGTAGAGCCTTTGCTTGCAAGAACAGCATGTGTTGCTCTTCAAAGATTGTCTCAAGAGGATCAGAAGAAACTATTGTCTAGTAACGGGGCCCGGGTATTTGGTATATTAGAAAGCTTAGTAACTGGGTTTTGGCTCCCAGAAAACATATGGTACGCTGCTGCTGATAAGGCAATTGGTACAATATATGCAATTCATCCGACGCCCGAAACCCTAGCGGCTAGTCTTGTTAAAAAATCTCTTACTTTGGTATTTAGTAAAGGAGATGAGTTGCAAAACGATACTGAAAATGGTGGATCCAATGTCCTTACAACAGTTGAAGTAATGAAACTTGGTAGATATCTGTTTGTTGCAAGTCATGTTGCTATGAACCAATTGGTGTACATAGAAACTTGTGTTAGAAAGATTCAGAAAGAGAAAGCGAAGAGAGAGAAAATGGTTGCTGATGGGCAGAGCATTCATAGTAATGAGCCAAAGGAGAATGGAATTAGTGCAGAGTTGGGCTTTGCTGCCTCTGAGGATGCAATAATTGACACTCTTTCAGCTAGAGCAGAGAAAGAAATTGTTTCTGGTGGTTCTTCTGAGAAGAACTTGATTGGGCATTGTGCACCTTTCCTATCAAGACTCTGTAGAAATTTTAATCTGATGCATAAGTATCCTGAATTGCAGGCATCTGGAATGCTTGCTTTATGTCGATTTATGATTATTGATGCTGACTTTTGTGAGGCAAATCTCCAGCTTCTATTCACCGTTGTAGAAAGTGCACCATCAGAAACGGTTCGATCCAATTGCACCATCGCTCTTGGAGACCTGGCAGTTCGTTTTCCTAATCTATTAGAGCCGTGGACAGAGAATATGTATTCAAGGCTAAGCGATCCTTCAGTTTCAGTCAGGAAGAATGCCGTTTTGGTTCTTTCCCACCTCATTTTAAATGACATGATGAAGGTTAAAGGGTATATAAACGAAATGGCCATGCGATTAGAAGATGAAGATGAGAGAATTTCTAGCTTGGCCAAACTCTTCTTTCACGAGCTGTCAAAGAAAGGGAGCAATCCAATATATAATTTATTGCCCGATATCCTTGGAAAATTATCCAACCAGAATTTGAAGAGAGAATCTTTCTGCAACATCATGCAGTTTTTAATTGGTTCCATTAAGAAGGACAAACAAATGGAAGCTCTTGTTGAGAAGCTCTGCAACAGATTTAGTGGAGTCACAGATATTAGGCAGTGGGAATATATATCTTATTGCCTCTCTCAGCTAGCATTTACAGAGAAGGGCATTAAAAAGCTGATGGACTCATTCAAAACATACGAGCATGTCCTATCTGAAGACTCTGTGATGGATCATTTCAAAAGTATAATTAACAAGGGGAAGAAGTTTGCAAAACCTGAACTCAAAGCATGCATTGAGGAGTTTGAGGAGAAGATAAATAAATTCCACATTGAAAGGAAGGAGCAAGAAGTTACTGCAAAAAATGCCCAAGTCCACCAACAAAAAATTGATAGCTTGGATAGCTTTAGGGTGGCCAAGGAAGAAGGAGAGGAAAGTACGGAATCCCATTTCGATGGAGGAACATATGGCGAGGTCATTGATACATCTATGGATGCAACGAGCAAAATTTCTGGTGATGCATCAAATGAGTTGGAAGAATATTCCCAAAAAACTTGTAGTAGTGAGGTGGCCGATTCGGAACAAGATGACAGTGAGGTTCAATCGCCCGTAGTGAATCTCAGAGGTGCTTCTTCCAAGTCCAGAGCCAAGAAAAGCAGCATGAAAGATCAGAAGGATGAACCTTATACCTCCATTAGAAGAACTACCACCACCAGGTCGAAGAGAAGGTGCTCTCTCTCTCTGTCTCTATTTTAA

Network for GWHGAAZE004069

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12922.8	Cnd1_N	81	244	6.20E-38
PF12717.8	Cnd1	990	1150	4.20E-49

Protein Sequence

>GWHPAAZE004072
MAPPFIFPQTLLALEEDYEDGRLSVQNPTLIPSLRSSELEEFVKGVSFDLSDKELFCVEEQDVFDRVYSLVKGFGSLTPVCKVNLVESIRSNFSVLLPNIDSLSRVSQAQEDDGAPPVLDRIASHRNAFKIYTFFLIHIILAEESSITTATNSTKVAMSTRKKQPVSSWNWEPQRSRILNLIANSLEITLSLLFGSSDPDENYLSFIVKHTFSLFENAAILKDSDTKDALCRITGTCATKYHYMAHSCASILHLIHKYDFVVTHLADAVAGAEKKYADGSLATSLVREIGRTNPKDYVKDTVGAENVGRFLVELADRLPKLISTNIGLLVPHFGGESYKIRNALVGVLGKLVAKAFNDAEGEISSKSIRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVVVVASGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATLEQYKKKLNNLGPNAPSESVLEGLPTETDTCTGDGEVDHVDDADTVSKEQQDVGVLEQDSLSDSCLPHPDGGSAQKDSSVPDIGNLEQTRTLVASLEAGLRFSKCVSATMPILVQLMASSSATDVENAILLLMRCKQFQIDGSEASLRKMLPLVFSQDKSIYEAVENAFITIYLRKNPIETAKNLLSLAVDSNIGDLTALEFIVSALVSKGDITASMISALWDFFCFNVNGTTAEQSRGALSLLCMAAKSSAGVLSSHLQDIIDIGFGRWAKVEPLLARTACVALQRLSQEDQKKLLSSNGARVFGILESLVTGFWLPENIWYAAADKAIGTIYAIHPTPETLAASLVKKSLTLVFSKGDELQNDTENGGSNVLTTVEVMKLGRYLFVASHVAMNQLVYIETCVRKIQKEKAKREKMVADGQSIHSNEPKENGISAELGFAASEDAIIDTLSARAEKEIVSGGSSEKNLIGHCAPFLSRLCRNFNLMHKYPELQASGMLALCRFMIIDADFCEANLQLLFTVVESAPSETVRSNCTIALGDLAVRFPNLLEPWTENMYSRLSDPSVSVRKNAVLVLSHLILNDMMKVKGYINEMAMRLEDEDERISSLAKLFFHELSKKGSNPIYNLLPDILGKLSNQNLKRESFCNIMQFLIGSIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGIKKLMDSFKTYEHVLSEDSVMDHFKSIINKGKKFAKPELKACIEEFEEKINKFHIERKEQEVTAKNAQVHQQKIDSLDSFRVAKEEGEESTESHFDGGTYGEVIDTSMDATSKISGDASNELEEYSQKTCSSEVADSEQDDSEVQSPVVNLRGASSKSRAKKSSMKDQKDEPYTSIRRTTTTRSKRRCSLSLSLF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06677	YCS4, CNAP1, CAPD2	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0000278	biological_process	mitotic cell cycle
GO:0030261	biological_process	chromosome condensation
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.191
	SRR3591706	second leaf	1.668
	SRR3591707	mature leaf	0.325
	SRR3591708	Shoot apex	15.782
	SRR3591709	Stem	2.146
	SRR3591710	White floral bud	0.764
	SRR3591711	White flower	0.360
	SRR3591712	Green floral bud	0.813
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.239
	SRR8316896	Juvenile bud stage	2.379
	SRR8316897	Juvenile bud stage	1.054
	SRR8316894	Third green stage	0.713
	SRR8316900	Third green stage	1.290
	SRR8316901	Third green stage	1.028
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.498
	SRR8316903	Complete white stage	0.191
	SRR8316902	Silver flowering stage	0.081
	SRR8316904	Silver flowering stage	0.034
	SRR8316905	Silver flowering stage	0.051
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.146
	SRR8316908	Gold flowering stage	0.125
SRP132670	SRR6706286	Control	0.921
	SRR6706287	Light intensity 50%	0.985
	SRR6706288	Light intensity 20%	1.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.274
	CNS0095593	Slightly white alabastrum(diploid) 2	1.170
	CNS0095594	Slightly white alabastrum(diploid) 3	1.251
	CNS0095595	Whole white alabastrum(diploid) 2	0.628
	CNS0095596	Whole white alabastrum(diploid) 3	0.666
	CNS0095597	Whole white alabastrum(diploid) 4	0.484
	CNS0095598	Silvery flower (diploied) 1	0.953
	CNS0095599	Silvery flower (diploied) 2	0.936
	CNS0095600	Silvery flower (diploied) 3	0.627
	CNS0095601	Golden flower (diploid) 1	0.480
	CNS0095602	Golden flower (diploid) 2	0.492
	CNS0095603	Golden flower (diploid) 3	0.511
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.262
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.784
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.778
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.310
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.578
	CNS0095610	Silvery flower (tetraploid) 1	0.105
	CNS0095611	Silvery flower (tetraploid) 2	0.210
	CNS0095612	Silvery flower (tetraploid) 3	0.130
	CNS0095613	Golden flower (tetraploid) 1	0.129
	CNS0095614	Golden flower (tetraploid) 2	0.172
	CNS0095615	Golden flower (tetraploid) 3	0.069
CRA001975	CRR073297	Stem 1	2.074
	CRR073298	Stem 2	1.793
	CRR073299	Stem 3	1.826
	CRR073300	Leaf 1	0.829
	CRR073301	Leaf 2	0.454
	CRR073302	Leaf 3	0.313
	CRR073303	Juvenile bud 1	0.451
	CRR073304	Juvenile bud 2	0.192
	CRR073305	Juvenile bud 3	0.791
	CRR073306	Third green 1	0.014
	CRR073307	Third green 2	0.066
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.021
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.045
	CRR073313	Silver flowering 2	0.026
	CRR073314	Silver flowering 3	0.023
	CRR073315	Gold flowering 1	0.249
	CRR073316	Gold flowering 2	0.814
	CRR073317	Gold flowering 3	0.377
	CRR073318	Tawny withering 1	2.456
	CRR073319	Tawny withering 2	1.370
	CRR073320	Tawny withering 3	1.820