Detail information of GWHGAAZE004019


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273311.11.3041E-148PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis vinifera]
COGYP_183289.11E-15ribosome biogenesis protein
trEMBLtr|F6HKA1|F6HKA1_VITVI5E-149Putative uncharacterized protein {ECO:0000313|EMBL:CCB55323.1}
TAIR10AT3G57000.19E-103nucleolar essential protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene109519436109523486+
GWHAAZE00000001mRNA109519436109523486+
GWHAAZE00000001exon109519436109519805+
GWHAAZE00000001exon109520191109520283+
GWHAAZE00000001exon109520717109520861+
GWHAAZE00000001exon109520998109521108+
GWHAAZE00000001exon109521601109521683+
GWHAAZE00000001exon109521775109521832+
GWHAAZE00000001exon109523407109523486+
GWHAAZE00000001five_prime_UTR109519436109519535+
GWHAAZE00000001CDS109519536109519805+
GWHAAZE00000001CDS109520191109520283+
GWHAAZE00000001CDS109520717109520861+
GWHAAZE00000001CDS109520998109521108+
GWHAAZE00000001CDS109521601109521683+
GWHAAZE00000001CDS109521775109521832+
GWHAAZE00000001CDS109523407109523486+
Transcript Sequence

Network for GWHGAAZE004019

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03587.15EMG1762737.10E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14568EMG1, NEP1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0008168molecular_functionmethyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.886
SRR3591706second leaf9.138
SRR3591707mature leaf5.940
SRR3591708Shoot apex13.175
SRR3591709Stem9.027
SRR3591710White floral bud11.714
SRR3591711White flower18.362
SRR3591712Green floral bud15.572
SRR3591713Yellow flower16.842
SRP173429 SRR8316895Juvenile bud stage 11.212
SRR8316896Juvenile bud stage 16.036
SRR8316897Juvenile bud stage 14.493
SRR8316894Third green stage 7.348
SRR8316900Third green stage 21.894
SRR8316901Third green stage 20.168
SRR8316898Complete white stage 4.940
SRR8316899Complete white stage 29.107
SRR8316903Complete white stage 9.411
SRR8316902Silver flowering stage5.414
SRR8316904Silver flowering stage9.345
SRR8316905Silver flowering stage3.671
SRR8316906Gold flowering stage 14.212
SRR8316907Gold flowering stage 12.252
SRR8316908Gold flowering stage 25.475
SRP132670SRR6706286Control12.609
SRR6706287Light intensity 50%11.314
SRR6706288Light intensity 20%13.403
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.086
CNS0095593Slightly white alabastrum(diploid) 214.672
CNS0095594Slightly white alabastrum(diploid) 312.296
CNS0095595Whole white alabastrum(diploid) 212.724
CNS0095596Whole white alabastrum(diploid) 39.811
CNS0095597Whole white alabastrum(diploid) 47.898
CNS0095598Silvery flower (diploied) 114.272
CNS0095599Silvery flower (diploied) 214.958
CNS0095600Silvery flower (diploied) 317.583
CNS0095601Golden flower (diploid) 111.073
CNS0095602Golden flower (diploid) 217.097
CNS0095603Golden flower (diploid) 314.219
CNS0095604Slightly white alabastrum(tetraploid) 111.772
CNS0095605Slightly white alabastrum(tetraploid) 212.845
CNS0095606Slightly white alabastrum(tetraploid) 319.773
CNS0095607Whole white alabastrum(tetraploid) 15.056
CNS0095608Whole white alabastrum(tetraploid) 26.380
CNS0095609Whole white alabastrum(tetraploid) 313.821
CNS0095610Silvery flower (tetraploid) 112.359
CNS0095611Silvery flower (tetraploid) 212.244
CNS0095612Silvery flower (tetraploid) 38.203
CNS0095613Golden flower (tetraploid) 16.800
CNS0095614Golden flower (tetraploid) 29.053
CNS0095615Golden flower (tetraploid) 39.940
CRA001975CRR073297Stem 18.376
CRR073298Stem 27.052
CRR073299Stem 38.907
CRR073300Leaf 16.661
CRR073301Leaf 26.829
CRR073302Leaf 39.489
CRR073303Juvenile bud 18.172
CRR073304Juvenile bud 27.896
CRR073305Juvenile bud 38.090
CRR073306Third green 11.423
CRR073307Third green 21.258
CRR073308Third green 32.332
CRR073309Second white 13.205
CRR073310Second white 23.196
CRR073311Second white 32.443
CRR073312Silver flowering 12.855
CRR073313Silver flowering 25.235
CRR073314Silver flowering 34.363
CRR073315Gold flowering 15.105
CRR073316Gold flowering 26.205
CRR073317Gold flowering 36.407
CRR073318Tawny withering 16.127
CRR073319Tawny withering 28.808
CRR073320Tawny withering 37.285