Gene detail

Detail information of GWHGAAZE003871

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009362029.1	0	PREDICTED: cycloartenol synthase 2-like [Pyrus x bretschneideri]
COG	YP_004346025.1	1E-157	squalene/oxidosqualene cyclase
Swissprot	tr\|O82139\|CAS1_PANGI	0	Cycloartenol Synthase
trEMBL	tr\|D7T0P8\|D7T0P8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24077.3}
TAIR10	AT2G07050.1	0	cycloartenol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106229303	106242205	+
GWHAAZE00000001	mRNA	106229303	106242205	+
GWHAAZE00000001	exon	106229303	106229357	+
GWHAAZE00000001	exon	106229498	106229712	+
GWHAAZE00000001	exon	106231161	106231206	+
GWHAAZE00000001	exon	106232611	106232796	+
GWHAAZE00000001	exon	106233271	106233465	+
GWHAAZE00000001	exon	106233562	106233646	+
GWHAAZE00000001	exon	106233810	106233976	+
GWHAAZE00000001	exon	106235439	106235561	+
GWHAAZE00000001	exon	106236096	106236209	+
GWHAAZE00000001	exon	106236382	106236504	+
GWHAAZE00000001	exon	106236997	106237119	+
GWHAAZE00000001	exon	106237198	106237296	+
GWHAAZE00000001	exon	106237943	106237999	+
GWHAAZE00000001	exon	106241145	106241191	+
GWHAAZE00000001	exon	106241281	106241424	+
GWHAAZE00000001	exon	106242013	106242205	+
GWHAAZE00000001	five_prime_UTR	106229303	106229357	+
GWHAAZE00000001	five_prime_UTR	106229498	106229518	+
GWHAAZE00000001	CDS	106229519	106229712	+
GWHAAZE00000001	CDS	106231161	106231206	+
GWHAAZE00000001	CDS	106232611	106232796	+
GWHAAZE00000001	CDS	106233271	106233465	+
GWHAAZE00000001	CDS	106233562	106233646	+
GWHAAZE00000001	CDS	106233810	106233976	+
GWHAAZE00000001	CDS	106235439	106235561	+
GWHAAZE00000001	CDS	106236096	106236209	+
GWHAAZE00000001	CDS	106236382	106236504	+
GWHAAZE00000001	CDS	106236997	106237119	+
GWHAAZE00000001	CDS	106237198	106237296	+
GWHAAZE00000001	CDS	106237943	106237999	+
GWHAAZE00000001	CDS	106241145	106241191	+
GWHAAZE00000001	CDS	106241281	106241424	+
GWHAAZE00000001	CDS	106242013	106242205	+

Transcript Sequence
>GWHTAAZE003877 GATTATTCAACACAGTTGATTATTCAACACCGAATCCAGCTAAATTTTGAATTATAGTAGACAAGGTACAATTACAATGTGGAAGCTTAAGTTCTCAGAGGGAGGGAGTCCATGGCTTCGGAGTGTCAATGATCACGTCGGTAGGCAAATTTGGGAGTTCGATCCTACTCGGATCCCCGAGGAACTGGCCGAGATCGATAATGCTCGCCAGAATTTTCACGCCCATCGCTTCGAGAAAAGCACAGCTCAGATTTGCTTATGCGCATTCAGCGACTCTGTAGCGACACATCTGAATTACTGCAGAACTGTTCTAGAGTTTTCTAAGGAGAATCCTGGTCATATAATCTTACCCCAAGTCAAGGTCAAAGATACTGAAGATATTACAGAGGATAAAGTGACAGACACGTTAAAAAGAGCTATCAATTACCATTCGACTATCCAGGCTCATGATGGACATTGGGGAGGAGATTATGGAGGTCCTATGTTTCTAATGCCGGGTTTGAACAAAGATGGTGGATGGGGTTTACACATTGAGGGTCCAAGCACAATGTTTGGTACTGCCTTGAACTATGTTACCATGAGGTTGCTTGGCGAAGGACCAGATGATGGACAGGGGGCAATGGAGAAAGGGCGTAAATGGATTCTGGACCATGGTGGTGCCACTTATATAACATCATGGGGAAAAATGTGGCTTTCGGTACTTGGGGTGTTTGAATGGTCTGGCAATAACCCCTTGCCCCCTGAGATATGGCTTTTACCATATATTCTTCCATTCCATCCAGGAAGGATGTGGTGTCACTGTCGAATGGTTTATCTGCCTATGTCATACTTATATGGGAAGAGGTTTATTGGTCCGATCACACCAACTGTTCTTGCTTTGAGAAAAGAACTCTTCACTGCCCCGTACCACGAAATAGATTGGAATGAAGCACGCAACCTATGTGCAAAGGAAGATCTGTATTACCCACACCCTCTCATACAGGACATTCTTTGGACATCTCTTCACAAAGCTGTGGAACCTATTGTAATGCGTTGGCCTGGAAAAAAGTTGAGAGAAAAGGCTCTTTCCACTGTGTTAAATATGCTCTGCTGTTGGGCAGAAGATCCAAACTCAGAGGCTTTCAAGTTGCATCTCCCCAGAATCAATGACTATCTGTGGCTTGCTGAAGATGGCATGAAAATGCAGGGTTATAATGGAAGTCAATTATGGGACACTGCTTTTGCTACTCAAGCAATTATCTCTACGAATCTTGTAGAAGAATATGGTCCAACTCTGAGAAAAGCACACACTTACATGAAAAAATCACAGGTGTTGGAGGATTGCCCAGGCAATCTTGATTATTGGTATCGTCACATCTCAAAAGGTGCCTGGCCTTTCTCGACTGCAGATCACGGATGGCCAATTTCAGATTGCACTGCAGAAGGACTGAAGGCTGTTCTTCAGTTATCAAAGTTGCCATCAGAAATTGTTGGTGAACCATTGGATGCAAACCGGTTGTATGATGCTGTCAATGTTATTCTTTCTTTACAGAATAGTGATGGTGGCTTTGCAACATATGAACTCACAAGATCCTATAGCTGGTTGGAGTTAATCAATCCTGCAGAAACATTTGGTGACATTGTCATTGACTACCCTTATGTAGAATGTACTTCAGCTGCAATTCAAGCGTTGGAATCATTCAAAAAGCTATATCCTGGGCATCGGAGAGAAGAAATAAGATCCTGTATTGAAAAAGCCACTCTTTTCATTGAAAAGATTCAAGAAGCAGATGGCTCATGGTATGGATCTTGGGGTGTTTGCTTTACCTATGGTACATGGTTCGGGATTAAAGGCTTAGTAGCTGCTGGGAAGAACTTCTCTAATTCCCCTAGCATCCGCAAGGGTTGTGAGTTTCTATTGTCGAAACAACTTGCTTCGGGTGGGTGGGGAGAGAGTTACCTTTCATGTCAGAACAAGGTCAAGTTTATGTAA

Network for GWHGAAZE003871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00432.22	Prenyltrans	112	135	1.4
PF13249.7	SQHop_cyclase_N	143	333	4.30E-30
PF13243.7	SQHop_cyclase_C	375	627	1.40E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01853	CAS1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.974
	SRR3591706	second leaf	28.732
	SRR3591707	mature leaf	13.908
	SRR3591708	Shoot apex	27.205
	SRR3591709	Stem	37.244
	SRR3591710	White floral bud	9.741
	SRR3591711	White flower	38.410
	SRR3591712	Green floral bud	14.481
	SRR3591713	Yellow flower	135.049
SRP173429	SRR8316895	Juvenile bud stage	35.490
	SRR8316896	Juvenile bud stage	60.571
	SRR8316897	Juvenile bud stage	17.636
	SRR8316894	Third green stage	14.792
	SRR8316900	Third green stage	33.491
	SRR8316901	Third green stage	26.376
	SRR8316898	Complete white stage	4.383
	SRR8316899	Complete white stage	20.051
	SRR8316903	Complete white stage	7.398
	SRR8316902	Silver flowering stage	18.528
	SRR8316904	Silver flowering stage	29.657
	SRR8316905	Silver flowering stage	16.205
	SRR8316906	Gold flowering stage	69.472
	SRR8316907	Gold flowering stage	64.860
	SRR8316908	Gold flowering stage	61.020
SRP132670	SRR6706286	Control	15.095
	SRR6706287	Light intensity 50%	16.783
	SRR6706288	Light intensity 20%	19.069
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.476
	CNS0095593	Slightly white alabastrum(diploid) 2	13.474
	CNS0095594	Slightly white alabastrum(diploid) 3	14.832
	CNS0095595	Whole white alabastrum(diploid) 2	10.932
	CNS0095596	Whole white alabastrum(diploid) 3	10.089
	CNS0095597	Whole white alabastrum(diploid) 4	10.154
	CNS0095598	Silvery flower (diploied) 1	19.331
	CNS0095599	Silvery flower (diploied) 2	22.125
	CNS0095600	Silvery flower (diploied) 3	34.879
	CNS0095601	Golden flower (diploid) 1	25.840
	CNS0095602	Golden flower (diploid) 2	45.871
	CNS0095603	Golden flower (diploid) 3	44.573
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.591
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.511
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.408
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.252
	CNS0095610	Silvery flower (tetraploid) 1	25.670
	CNS0095611	Silvery flower (tetraploid) 2	19.448
	CNS0095612	Silvery flower (tetraploid) 3	39.164
	CNS0095613	Golden flower (tetraploid) 1	42.835
	CNS0095614	Golden flower (tetraploid) 2	26.246
	CNS0095615	Golden flower (tetraploid) 3	48.327
CRA001975	CRR073297	Stem 1	35.448
	CRR073298	Stem 2	32.392
	CRR073299	Stem 3	41.405
	CRR073300	Leaf 1	22.671
	CRR073301	Leaf 2	18.031
	CRR073302	Leaf 3	19.891
	CRR073303	Juvenile bud 1	14.759
	CRR073304	Juvenile bud 2	6.092
	CRR073305	Juvenile bud 3	13.535
	CRR073306	Third green 1	11.156
	CRR073307	Third green 2	12.824
	CRR073308	Third green 3	12.775
	CRR073309	Second white 1	47.837
	CRR073310	Second white 2	51.251
	CRR073311	Second white 3	60.007
	CRR073312	Silver flowering 1	46.151
	CRR073313	Silver flowering 2	38.970
	CRR073314	Silver flowering 3	40.452
	CRR073315	Gold flowering 1	7.086
	CRR073316	Gold flowering 2	9.904
	CRR073317	Gold flowering 3	8.776
	CRR073318	Tawny withering 1	17.126
	CRR073319	Tawny withering 2	22.552
	CRR073320	Tawny withering 3	14.569