Gene detail

Detail information of GWHGAAZE003857

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010653251.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9C585\|UBP8_ARATH	Ubiquitin carboxyl-terminal hydrolase 8
trEMBL	tr\|A0A068UPV6\|A0A068UPV6_COFCA	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT5G22030.2	ubiquitin-specific protease 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	105833205	105851138	-
GWHAAZE00000001	mRNA	105833205	105851138	-
GWHAAZE00000001	exon	105851083	105851138	-
GWHAAZE00000001	exon	105850036	105850165	-
GWHAAZE00000001	exon	105848345	105848404	-
GWHAAZE00000001	exon	105848167	105848253	-
GWHAAZE00000001	exon	105847621	105848007	-
GWHAAZE00000001	exon	105845830	105845970	-
GWHAAZE00000001	exon	105845534	105845704	-
GWHAAZE00000001	exon	105844167	105844424	-
GWHAAZE00000001	exon	105842635	105842783	-
GWHAAZE00000001	exon	105836517	105837050	-
GWHAAZE00000001	exon	105834778	105835051	-
GWHAAZE00000001	exon	105833205	105833315	-
GWHAAZE00000001	CDS	105851083	105851138	-
GWHAAZE00000001	CDS	105850036	105850165	-
GWHAAZE00000001	CDS	105848345	105848404	-
GWHAAZE00000001	CDS	105848167	105848253	-
GWHAAZE00000001	CDS	105847621	105848007	-
GWHAAZE00000001	CDS	105845830	105845970	-
GWHAAZE00000001	CDS	105845534	105845704	-
GWHAAZE00000001	CDS	105844167	105844424	-
GWHAAZE00000001	CDS	105842635	105842783	-
GWHAAZE00000001	CDS	105836517	105837050	-
GWHAAZE00000001	CDS	105834778	105835051	-
GWHAAZE00000001	CDS	105833205	105833315	-

Transcript Sequence
>GWHTAAZE003863 ATGTACATGTGGTGTAAGTTGTGGAAGGCAAAAAATCTCTATGATAAGGAAGCAAGGCACAATGATTTGAAGGATGTTGGGAGCTTCTCAGCGGCGGGGGAAAATATGCAGGATTTGTTCTCTTTAGACATAAAGCTTTCGTTTTCTCGGAAAACAAATTCTTTGATTGTAAAGATTAGCCAGAAGGACAATGCAGTTGGAGCTTTCAAAAGGGCTTGTGCTATATTCTGCATTGAGTCTGGTTTGTTGCATATATGGGACTTCTCAGGACAGACAAGCCAGTTTTTCTTAAATGACAGAAAGATAACTAATGATTTAGGCCAACCAGATGAGATTCTCCTGGAATTGCAAGTCTATGGTTTCTCTTATTTGATGAAGGGAAGAAACGGATTGAAGGATGAAATGACTATTCAACAGTTTAAGACTGAAAATTCCTTTCCCAGCAGTTCACATAAGATGAATGGGAACACTGACAATATCAACTCGTATTTTAAGATAAATGGGAGTATTGACCATATAAACTCCTTTCCCAACTGTCCTCCCTTTGGTAGTAGACACAATAAAGTTTGTGTTTTGGGCTTGGCTGGATTGTATAATCTCGGGAATACTTGCTTCATGAACAGCGCTATCCAGTGCTTGGCGCATACACCGAAGCTTGTTGATTATTTTCTCGGAGACTTCAGAAAGGATCTAAATTTTGATAATCCCTTGGGCATGAATGGTAAGCTTGCTTTAGCATTTGGAGACTTGTTAAGGAAGCTATGGGCTCCGGGAGCTACAGCGGTGGCTCCAACGGCATTCAAGTCCACACTTCCTGGTTTTGCTCCCCAATTTGGTGGATACAATCAGCATGATTCACAAGAATTTCTTGCCTTTTTGTTGGACGGACTCCATGAAGATCTGAATCGTGTCAAAGATAAACCTTATATAGAAGCAAAGGATGCTGATGGCCATCCAGACGAAGAAGTAGCGAACGAACACTGGCGAAATCATCTAGCCCGCAACAATTCCATCATAGTTGACATGTGTCAAGGTCAATATAGGTCAACATTGTTTTGTCCTGTTTGCAAGAAGTTATCAGTTACATTTGATCCATTTATGTACCTGTCTTTACCGCTACTTTCAAGAATGATGCGGACTATGACTTTGACGGTTTTGAGCACCAATGGGACCAGTTTGCCGTTTCCGGTCACTGTAACTGTTCCCACAGATGCGACATGTGAGGATCTTGTTCAGGCCATAAGCACCTCATGTTCTTTGGGGGAGAATGAAACACTGCTGATAGCTGAGATATACAACAATTGCATTATTCAATTCTTCGATAATCTTGCTGAGACGATTGAACTGATTAGAGATGGCGATCGACTTGTTGCATATCGAGTGCCAAAAGATAGTGATACATCTCCTCTTGTTGTGTTTATGCATCAAAAGGTGGATAAGTACTTTCCTTACAGTTCAACTGCGAAGAAATTTGGCATTCCTCTTGTTGCAAGGATGACTGATTTTTCTAAAGGATCTAAGATACGTGAAACGTTCCTAAACTTACTACATCCATTTTTAATGCCAGTGGAAGACGATTATGATGATGATGCTCAAAACGTTGGTGACGAAGATATCGAGATGGGGGATGTAATTAGCACCACATCATTATTAGATGGAGACGAAGATGCAGACGCTGATTTAGAGGAGGAGGATTTCCAGTTTCACTTATCGGAAGGGGAATTGTTATCTAGAAGTCTGAAGATAAGGATGAATGAGCCGGTGACCAATAAGACCGATACTCCTAAGATGGTCAACGTGCTAGTTTCTTGGCCGGATAAAATTATTGAAAAATATGATACATCCCTTCTAAGCGTGTTGCCAGAGATCTGCAAGCCTTTTTTTTTCTCAAAGAAGCCTCAAGAAACGGTCTCTCTATATAAATGCATTGAGTTATTCTTGAAGGAGGAGCCTCTAGGACCCAATGACATGTGGTACTGTCCTAACTGCAAGGAGCATCGGCAAGCAAGGAAAAAGTTAGATATTTGGAGATTGCCAGAGATTCTTATTGTTCATTTAAAGCGGTTCACATACAAGCGTTTTACAAAGGACAAGCTGGAAACTTTTGTGGACTTCCCTACTGAGGACTTAAATCTGTCAACTTACATTATTCACAACGATGGCAAGGTTTCCCATAAATACATGCTGTATGCCGTAAGCAATCACTACGGTAGCATGGGTGGTGGTCACTATACTGCTTTCGTTCAAGATGGACGTCGAAGGTGGTACGAGTTTGACGACAGCCATGTTTCCCCTATTAGCCAGGAAGACCAGATAAAAACATCAGCGGCCTACCTTCTCTTCTACCGGAGAGTATAA

Network for GWHGAAZE003857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	196	782	3.60E-83

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K21343	USP15	Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.895
	SRR3591706	second leaf	9.962
	SRR3591707	mature leaf	14.312
	SRR3591708	Shoot apex	13.374
	SRR3591709	Stem	18.747
	SRR3591710	White floral bud	14.338
	SRR3591711	White flower	23.054
	SRR3591712	Green floral bud	11.639
	SRR3591713	Yellow flower	17.799
SRP173429	SRR8316895	Juvenile bud stage	7.351
	SRR8316896	Juvenile bud stage	9.339
	SRR8316897	Juvenile bud stage	5.079
	SRR8316894	Third green stage	4.553
	SRR8316900	Third green stage	10.223
	SRR8316901	Third green stage	9.321
	SRR8316898	Complete white stage	5.719
	SRR8316899	Complete white stage	15.938
	SRR8316903	Complete white stage	10.163
	SRR8316902	Silver flowering stage	9.604
	SRR8316904	Silver flowering stage	16.070
	SRR8316905	Silver flowering stage	5.687
	SRR8316906	Gold flowering stage	24.546
	SRR8316907	Gold flowering stage	16.142
	SRR8316908	Gold flowering stage	20.780
SRP132670	SRR6706286	Control	8.366
	SRR6706287	Light intensity 50%	8.100
	SRR6706288	Light intensity 20%	7.908
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.737
	CNS0095593	Slightly white alabastrum(diploid) 2	7.752
	CNS0095594	Slightly white alabastrum(diploid) 3	6.295
	CNS0095595	Whole white alabastrum(diploid) 2	5.836
	CNS0095596	Whole white alabastrum(diploid) 3	4.033
	CNS0095597	Whole white alabastrum(diploid) 4	5.828
	CNS0095598	Silvery flower (diploied) 1	10.288
	CNS0095599	Silvery flower (diploied) 2	8.912
	CNS0095600	Silvery flower (diploied) 3	18.907
	CNS0095601	Golden flower (diploid) 1	9.940
	CNS0095602	Golden flower (diploid) 2	18.303
	CNS0095603	Golden flower (diploid) 3	17.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.278
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.343
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.981
	CNS0095610	Silvery flower (tetraploid) 1	19.674
	CNS0095611	Silvery flower (tetraploid) 2	18.033
	CNS0095612	Silvery flower (tetraploid) 3	11.704
	CNS0095613	Golden flower (tetraploid) 1	10.055
	CNS0095614	Golden flower (tetraploid) 2	15.657
	CNS0095615	Golden flower (tetraploid) 3	16.190
CRA001975	CRR073297	Stem 1	9.942
	CRR073298	Stem 2	8.132
	CRR073299	Stem 3	6.718
	CRR073300	Leaf 1	8.297
	CRR073301	Leaf 2	8.217
	CRR073302	Leaf 3	5.526
	CRR073303	Juvenile bud 1	8.460
	CRR073304	Juvenile bud 2	5.001
	CRR073305	Juvenile bud 3	9.106
	CRR073306	Third green 1	6.022
	CRR073307	Third green 2	5.132
	CRR073308	Third green 3	5.411
	CRR073309	Second white 1	5.458
	CRR073310	Second white 2	7.935
	CRR073311	Second white 3	9.165
	CRR073312	Silver flowering 1	5.255
	CRR073313	Silver flowering 2	6.770
	CRR073314	Silver flowering 3	6.548
	CRR073315	Gold flowering 1	7.231
	CRR073316	Gold flowering 2	11.141
	CRR073317	Gold flowering 3	5.271
	CRR073318	Tawny withering 1	8.298
	CRR073319	Tawny withering 2	9.179
	CRR073320	Tawny withering 3	9.335