Gene detail

Detail information of GWHGAAZE003681

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009782631.1	0	PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic [Nicotiana sylvestris]
COG	YP_002490578.1	3E-108	glycogen/starch synthase
Swissprot	tr\|P93568\|SSY1_SOLTU	0	Soluble starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|K4BI85\|K4BI85_SOLLC	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}
TAIR10	AT5G24300.2	0	Glycogen/starch synthases, ADP-glucose type

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	102101003	102107961	+
GWHAAZE00000001	mRNA	102101003	102107961	+
GWHAAZE00000001	exon	102101003	102101416	+
GWHAAZE00000001	exon	102102002	102102049	+
GWHAAZE00000001	exon	102102940	102103260	+
GWHAAZE00000001	exon	102103616	102103736	+
GWHAAZE00000001	exon	102104270	102104351	+
GWHAAZE00000001	exon	102104826	102104999	+
GWHAAZE00000001	exon	102105136	102105217	+
GWHAAZE00000001	exon	102106101	102106192	+
GWHAAZE00000001	exon	102106376	102106438	+
GWHAAZE00000001	exon	102106520	102106609	+
GWHAAZE00000001	exon	102106871	102106995	+
GWHAAZE00000001	exon	102107084	102107192	+
GWHAAZE00000001	exon	102107289	102107344	+
GWHAAZE00000001	exon	102107536	102107575	+
GWHAAZE00000001	exon	102107803	102107961	+
GWHAAZE00000001	five_prime_UTR	102101003	102101103	+
GWHAAZE00000001	CDS	102101104	102101416	+
GWHAAZE00000001	CDS	102102002	102102049	+
GWHAAZE00000001	CDS	102102940	102103260	+
GWHAAZE00000001	CDS	102103616	102103736	+
GWHAAZE00000001	CDS	102104270	102104351	+
GWHAAZE00000001	CDS	102104826	102104999	+
GWHAAZE00000001	CDS	102105136	102105217	+
GWHAAZE00000001	CDS	102106101	102106192	+
GWHAAZE00000001	CDS	102106376	102106438	+
GWHAAZE00000001	CDS	102106520	102106609	+
GWHAAZE00000001	CDS	102106871	102106995	+
GWHAAZE00000001	CDS	102107084	102107192	+
GWHAAZE00000001	CDS	102107289	102107344	+
GWHAAZE00000001	CDS	102107536	102107575	+
GWHAAZE00000001	CDS	102107803	102107961	+

Transcript Sequence
>GWHTAAZE003687 TGAGGCAGTTGTTTCTCTTTTTCTTAATTTGTCCCAATTCTCGATCCCTTACGTCCTCAATTGGGTCTACGACTTTATCTCCTTCTCCTTTTCTCTCTGTAATGGAGACTCTGCAACTCTCTCGTATTTTCTGCTGTAAATCATCTCTGAATCTGACTGAGACTCCTCTGAATTCGAGTGTACTTAGACAACTCGGTATTCCTTCCTTCTCGAGTCAAAGGAGTGCCAAAATTCGGTCTCTAGTTATTAGAACTACAACAACAAGAATAAGAAGATCAATTTCGAGGGCTAGGGCCGGAGGTTCCCCTCAAGATGGCTCTTCTACTGTCGAAGATGACAAGCAGGGCCTTTTAATGGGCAGTGAGAGGGATGATTCTGGTTCTATTGTTGGCTTCCAATTGTTTCCTCAATCTGTCATGAGACGTGACTATTTGGTTAAGTATTTTGCTCAGATTTATGAAAGTGACAACAAAGTTATCGGATCGCATGAGAAAGCTACTAGTAGTAAAAAGGAAGTGACAGATGATGTAGAAAGAATCGATAAGAAACCTACCAAAGTAACATACAATATTGTTTTCGTTACTGCTGAAGCAGCGCCATATTCAAAGACAGGGGGCTTAGGAGATGTTTGTGGTTCTTTGCCTATAGCACTAGCAGCCCGTGGACATCGTGTAATGGTTGTCTCTCCTAGATATTTGCATGGTGGCCCTTCGGATAAAAAATATGCGGTGCAACTGATGTTGGTTGCCGAACCAAGATCTATTGCTCTGGAGGGTGCAGGAGTTTCGGTTTACTTTACTTTGCCACGGCGTCGAAGCTCCTTAGTGCTTCCATTGGGAGGGTTCACTTATGGAGAGAAGTGTTTGTTCCTTGCTAACGACTGGCATGCAGGCTTGGTGCCAGTACTATTGGCAGCGAAGTATCGGCCATATGGAGTTTATAAGGATGCTCGAAGTATTGTTGTGATACATAATTTGGCACATCAGGGCGTGGAGCCTGCAATAACCTACAGTAATTTGGGAGTGCCTCCTGAGTGGTATGGAGCTCTGGAATGGGTATTTCCCACGTGGGCAAGGACACATGCCCTTGATACTGGTGAGGCTGTCAATGTTCTAAAAGGTGCAATTGTGACGGCAGACCGGATTCTAACAGTTAGCCAGGGCTACTCTCAGGAAATAACAACTCCTGAAGGTGGATACGGGCTGCATGAGCTATTGACCAGTCGGAAGATAGTCATCAATGGGATCACAAATGGCATTGATGTTAATGAATGGGACCCATCTTCAGATCAGCATATTCCTTCCCATTACTCCATTAATGACCTTTCTGGAAAGGTTGAATGCAAGATTGCTTTGCAAAAGGAATTAGGTCTTCCAATTAAGCCTGATTGTCCATTGATTGGATTCATTGGGAGACTGGACTACCAGAAAGGTATTGATATAATTCTCTCAGCTACTCCAGGGCTGTTGCAAGATGATGTCCAGTTTGTAATGCTTGGGTCTGGGGAGAAACAGTATGAAGAATGGATGAGAGCGACAGAGTCATCTTTTAAAGACAAATATAGGGGATGGGTTGGATTTAATGTTCCTATTTCTCATCGTATAACAGCTGGTTGTGACATACTCTTAATGCCCTCAAGATTTGAGCCATGTGGTCTAAACCAGTTGTATGCAATGAGATACGGCACAGTACCTGTAGTTCATGGCACTGGAGGACTTAGAGATACAGTGGAGACATTTGACCCTTATGCTAACGAAGGAAGTGGAGAAGGGACTGGGTGGGCCTTCTCTCCCCTGACGAAGGAAAGTATGTTGTCTGCACTAAGGGTTGCGATTGGGACGTACAGAGAACACAAGTCTTCATGGGCAGGGTTGATTAAGAGAGGAATGGAAAGGGATTGCACGTGGGATAATGCTGCAGTTCAATACGAGCAAGTTTTTGAGTGGGCTTTCATAGATTCTCCTTATGTTAGCTGA

Network for GWHGAAZE003681

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08323.12	Glyco_transf_5	156	206	1.30E-17
PF08323.12	Glyco_transf_5	257	373	2.90E-28
PF00534.21	Glycos_transf_1	426	570	1.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00703	glgA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0004373	molecular_function	glycogen (starch) synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.765
	SRR3591706	second leaf	27.438
	SRR3591707	mature leaf	25.584
	SRR3591708	Shoot apex	12.694
	SRR3591709	Stem	5.276
	SRR3591710	White floral bud	14.663
	SRR3591711	White flower	11.440
	SRR3591712	Green floral bud	23.962
	SRR3591713	Yellow flower	7.733
SRP173429	SRR8316895	Juvenile bud stage	7.688
	SRR8316896	Juvenile bud stage	12.230
	SRR8316897	Juvenile bud stage	9.402
	SRR8316894	Third green stage	6.210
	SRR8316900	Third green stage	23.285
	SRR8316901	Third green stage	18.730
	SRR8316898	Complete white stage	5.342
	SRR8316899	Complete white stage	17.547
	SRR8316903	Complete white stage	8.676
	SRR8316902	Silver flowering stage	3.293
	SRR8316904	Silver flowering stage	3.672
	SRR8316905	Silver flowering stage	3.118
	SRR8316906	Gold flowering stage	7.372
	SRR8316907	Gold flowering stage	6.728
	SRR8316908	Gold flowering stage	10.136
SRP132670	SRR6706286	Control	13.803
	SRR6706287	Light intensity 50%	17.851
	SRR6706288	Light intensity 20%	19.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.662
	CNS0095593	Slightly white alabastrum(diploid) 2	9.267
	CNS0095594	Slightly white alabastrum(diploid) 3	6.996
	CNS0095595	Whole white alabastrum(diploid) 2	8.775
	CNS0095596	Whole white alabastrum(diploid) 3	10.498
	CNS0095597	Whole white alabastrum(diploid) 4	8.786
	CNS0095598	Silvery flower (diploied) 1	5.595
	CNS0095599	Silvery flower (diploied) 2	6.214
	CNS0095600	Silvery flower (diploied) 3	8.817
	CNS0095601	Golden flower (diploid) 1	3.762
	CNS0095602	Golden flower (diploid) 2	5.942
	CNS0095603	Golden flower (diploid) 3	6.068
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.570
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.246
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.861
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.234
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.303
	CNS0095610	Silvery flower (tetraploid) 1	8.571
	CNS0095611	Silvery flower (tetraploid) 2	9.040
	CNS0095612	Silvery flower (tetraploid) 3	7.882
	CNS0095613	Golden flower (tetraploid) 1	2.377
	CNS0095614	Golden flower (tetraploid) 2	5.021
	CNS0095615	Golden flower (tetraploid) 3	2.054
CRA001975	CRR073297	Stem 1	12.434
	CRR073298	Stem 2	10.614
	CRR073299	Stem 3	9.694
	CRR073300	Leaf 1	14.400
	CRR073301	Leaf 2	15.022
	CRR073302	Leaf 3	13.527
	CRR073303	Juvenile bud 1	13.742
	CRR073304	Juvenile bud 2	10.336
	CRR073305	Juvenile bud 3	13.979
	CRR073306	Third green 1	3.832
	CRR073307	Third green 2	2.570
	CRR073308	Third green 3	2.822
	CRR073309	Second white 1	2.659
	CRR073310	Second white 2	2.121
	CRR073311	Second white 3	1.423
	CRR073312	Silver flowering 1	1.010
	CRR073313	Silver flowering 2	1.456
	CRR073314	Silver flowering 3	0.861
	CRR073315	Gold flowering 1	20.046
	CRR073316	Gold flowering 2	29.340
	CRR073317	Gold flowering 3	19.961
	CRR073318	Tawny withering 1	4.203
	CRR073319	Tawny withering 2	3.080
	CRR073320	Tawny withering 3	5.241