Gene detail

Detail information of GWHGAAZE003636

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009629954.1	2.7684E-118	PREDICTED: probable trehalose-phosphate phosphatase 2 [Nicotiana tomentosiformis]
COG	YP_003269585.1	2E-45	trehalose-phosphatase
Swissprot	tr\|Q67XC9\|TPPD_ARATH	2E-90	Probable trehalose-phosphate phosphatase D
trEMBL	tr\|M1AII2\|M1AII2_SOLTU	2E-109	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}
TAIR10	AT1G35910.1	8E-75	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101360006	101361911	-
GWHAAZE00000001	mRNA	101360006	101361911	-
GWHAAZE00000001	exon	101361753	101361911	-
GWHAAZE00000001	exon	101361494	101361598	-
GWHAAZE00000001	exon	101361299	101361370	-
GWHAAZE00000001	exon	101360838	101360894	-
GWHAAZE00000001	exon	101360567	101360668	-
GWHAAZE00000001	exon	101360238	101360456	-
GWHAAZE00000001	exon	101360006	101360143	-
GWHAAZE00000001	CDS	101361753	101361911	-
GWHAAZE00000001	CDS	101361494	101361598	-
GWHAAZE00000001	CDS	101361299	101361370	-
GWHAAZE00000001	CDS	101360838	101360894	-
GWHAAZE00000001	CDS	101360567	101360668	-
GWHAAZE00000001	CDS	101360238	101360456	-
GWHAAZE00000001	CDS	101360006	101360143	-

Transcript Sequence
>GWHTAAZE003642 ATGCAGATGATGAGAGGAAACATTGCAGCAAAGCTTTACCAAGCAATTGGATTTCAGAGATGGCTTGCCAAGACCCTTAATATTAGTGATGAAGCAATAAGCCCTGAAAAGAATATTATTAATGGTATTATTGATGATGAAGATTATATTACTTGGTTGAATGAACACCCTTCTGCACTGGAGTTCTTTAAGGAGATGATGAAGAATGCAAAAGGGAAGAGGATCGTTGTGTTTCTGGACTACGATGGGACACTTTCACCCATTATGCGCAGGGCAGTTTCTCAAGTTGCTAATCGGTTTCCGACAGCTATAATAACTGGTAGGAGTCGAGACAAGGGTAACGGATTTACCATCTTCCAACCTGCTCGAGAGTTTCTACCTGCAATCGAAAAGATGTTAAATGAGCTGGAGGAGAAAACGCATGACATACAAGGGGTCATGATAGAGGATAATAGGTTCTGCATCTCTGTGCATTACCGTCGCGTTCAAGAAGAGGACTACCGCGTACTGGAAGAAGAAGTGCAGTCAGTGCTAGACAAGTATCCCAAGTTTCACCTAACGAGGGGGAAGAAGGTAATGGAAATAAGGCCGTCAATAAAGTGGAACAAAGGGGATGCTGTTGAATATTTACTCGACACCCTAGGTTTTGCCAACTCTAATGATGTCCTCCCTCTCTATATCGGTGATGATCGAACTGATGAAGATGCTTTTAAGGTTCTAAGAAGAAGAAGACAAGCGTATCCGATAATAGTATCGAGGAAGCCAAGGGAAACAAGGGCTTCGTACTCGTTGAGAGACCCGTCAGAAGTATTAGCTTTCCTGACATGTTTGGGAAAATCATCGGCAGAATAA

Network for GWHGAAZE003636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02358.17	Trehalose_PPase	120	268	1.30E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01087	otsB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.065
	SRR3591706	second leaf	0.360
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.492
	SRR3591709	Stem	4.011
	SRR3591710	White floral bud	29.344
	SRR3591711	White flower	37.135
	SRR3591712	Green floral bud	0.991
	SRR3591713	Yellow flower	5.673
SRP173429	SRR8316895	Juvenile bud stage	0.377
	SRR8316896	Juvenile bud stage	0.807
	SRR8316897	Juvenile bud stage	0.126
	SRR8316894	Third green stage	0.126
	SRR8316900	Third green stage	1.113
	SRR8316901	Third green stage	1.288
	SRR8316898	Complete white stage	27.820
	SRR8316899	Complete white stage	1.688
	SRR8316903	Complete white stage	52.568
	SRR8316902	Silver flowering stage	17.870
	SRR8316904	Silver flowering stage	26.025
	SRR8316905	Silver flowering stage	1.552
	SRR8316906	Gold flowering stage	3.529
	SRR8316907	Gold flowering stage	16.444
	SRR8316908	Gold flowering stage	4.088
SRP132670	SRR6706286	Control	1.860
	SRR6706287	Light intensity 50%	2.632
	SRR6706288	Light intensity 20%	0.387
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.673
	CNS0095593	Slightly white alabastrum(diploid) 2	0.823
	CNS0095594	Slightly white alabastrum(diploid) 3	1.531
	CNS0095595	Whole white alabastrum(diploid) 2	1.202
	CNS0095596	Whole white alabastrum(diploid) 3	0.524
	CNS0095597	Whole white alabastrum(diploid) 4	0.620
	CNS0095598	Silvery flower (diploied) 1	1.568
	CNS0095599	Silvery flower (diploied) 2	1.855
	CNS0095600	Silvery flower (diploied) 3	4.947
	CNS0095601	Golden flower (diploid) 1	0.381
	CNS0095602	Golden flower (diploid) 2	1.141
	CNS0095603	Golden flower (diploid) 3	0.867
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.765
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.636
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.156
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.537
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.796
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.834
	CNS0095610	Silvery flower (tetraploid) 1	9.651
	CNS0095611	Silvery flower (tetraploid) 2	2.881
	CNS0095612	Silvery flower (tetraploid) 3	49.396
	CNS0095613	Golden flower (tetraploid) 1	5.484
	CNS0095614	Golden flower (tetraploid) 2	5.334
	CNS0095615	Golden flower (tetraploid) 3	10.549
CRA001975	CRR073297	Stem 1	0.335
	CRR073298	Stem 2	0.604
	CRR073299	Stem 3	0.188
	CRR073300	Leaf 1	0.973
	CRR073301	Leaf 2	0.863
	CRR073302	Leaf 3	1.119
	CRR073303	Juvenile bud 1	1.608
	CRR073304	Juvenile bud 2	12.505
	CRR073305	Juvenile bud 3	3.803
	CRR073306	Third green 1	81.388
	CRR073307	Third green 2	75.943
	CRR073308	Third green 3	78.033
	CRR073309	Second white 1	92.890
	CRR073310	Second white 2	92.911
	CRR073311	Second white 3	93.687
	CRR073312	Silver flowering 1	87.118
	CRR073313	Silver flowering 2	55.437
	CRR073314	Silver flowering 3	63.442
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.034
	CRR073318	Tawny withering 1	1.200
	CRR073319	Tawny withering 2	5.433
	CRR073320	Tawny withering 3	0.098