Gene detail

Detail information of GWHGAAZE003558

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009796826.1	0	PREDICTED: alpha-L-arabinofuranosidase 1-like [Nicotiana sylvestris]
COG	YP_003573897.1	2E-101	alpha-N-arabinofuranosidase
Swissprot	tr\|Q9SG80\|ASD1_ARATH	0	Alpha-L-arabinofuranosidase 1 (Precursor)
trEMBL	tr\|B9IHH9\|B9IHH9_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEF04345.2}
TAIR10	AT3G10740.1	0	alpha-L-arabinofuranosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100052554	100072322	+
GWHAAZE00000001	mRNA	100052554	100072322	+
GWHAAZE00000001	exon	100052554	100052648	+
GWHAAZE00000001	exon	100053520	100053730	+
GWHAAZE00000001	exon	100054098	100054152	+
GWHAAZE00000001	exon	100055033	100055244	+
GWHAAZE00000001	exon	100055453	100055574	+
GWHAAZE00000001	exon	100055662	100055809	+
GWHAAZE00000001	exon	100055929	100055998	+
GWHAAZE00000001	exon	100056163	100056308	+
GWHAAZE00000001	exon	100056398	100056443	+
GWHAAZE00000001	exon	100056567	100056619	+
GWHAAZE00000001	exon	100057003	100057147	+
GWHAAZE00000001	exon	100057344	100057462	+
GWHAAZE00000001	exon	100057588	100057659	+
GWHAAZE00000001	exon	100057864	100057967	+
GWHAAZE00000001	exon	100058109	100058165	+
GWHAAZE00000001	exon	100058316	100058517	+
GWHAAZE00000001	exon	100058622	100058768	+
GWHAAZE00000001	exon	100060689	100061028	+
GWHAAZE00000001	exon	100061577	100061660	+
GWHAAZE00000001	exon	100062274	100063322	+
GWHAAZE00000001	exon	100063425	100063487	+
GWHAAZE00000001	exon	100068937	100069025	+
GWHAAZE00000001	exon	100069138	100069241	+
GWHAAZE00000001	exon	100069337	100069436	+
GWHAAZE00000001	exon	100069528	100069603	+
GWHAAZE00000001	exon	100069690	100069804	+
GWHAAZE00000001	exon	100069887	100070418	+
GWHAAZE00000001	exon	100071830	100072322	+
GWHAAZE00000001	five_prime_UTR	100052554	100052648	+
GWHAAZE00000001	five_prime_UTR	100053520	100053556	+
GWHAAZE00000001	CDS	100053557	100053730	+
GWHAAZE00000001	CDS	100054098	100054152	+
GWHAAZE00000001	CDS	100055033	100055244	+
GWHAAZE00000001	CDS	100055453	100055574	+
GWHAAZE00000001	CDS	100055662	100055809	+
GWHAAZE00000001	CDS	100055929	100055998	+
GWHAAZE00000001	CDS	100056163	100056308	+
GWHAAZE00000001	CDS	100056398	100056443	+
GWHAAZE00000001	CDS	100056567	100056619	+
GWHAAZE00000001	CDS	100057003	100057147	+
GWHAAZE00000001	CDS	100057344	100057462	+
GWHAAZE00000001	CDS	100057588	100057659	+
GWHAAZE00000001	CDS	100057864	100057967	+
GWHAAZE00000001	CDS	100058109	100058165	+
GWHAAZE00000001	CDS	100058316	100058517	+
GWHAAZE00000001	CDS	100058622	100058768	+
GWHAAZE00000001	CDS	100060689	100061028	+
GWHAAZE00000001	CDS	100061577	100061660	+
GWHAAZE00000001	CDS	100062274	100063322	+
GWHAAZE00000001	CDS	100063425	100063487	+
GWHAAZE00000001	CDS	100068937	100069025	+
GWHAAZE00000001	CDS	100069138	100069241	+
GWHAAZE00000001	CDS	100069337	100069436	+
GWHAAZE00000001	CDS	100069528	100069603	+
GWHAAZE00000001	CDS	100069690	100069804	+
GWHAAZE00000001	CDS	100069887	100070418	+
GWHAAZE00000001	CDS	100071830	100072322	+

Transcript Sequence
>GWHTAAZE003564 AAAAAATTCAAAGTGCTCCCTCTATCTCTTACTCACTCCACATACACAACAGAAGACACAAAAACTAATTATTGTAGGCTACTCATTTCTTTCAGGCCACAAACAAGAAAATTTGAATGCTGTGAGGAAGAAATGGGTTCAAACTGTGCACCTTATCGGCTTCTACTTCTCTTTTTCACTGGGTTTTGTGCTCTGTGTCAATGTTCCACGGAGTTGCATGCGGACCAGACAGCGTTGCTGTTTGTAAATGCTTCTGAAGCTTCAGCAAGGAAGATACCCGAAACTCTTTTCGGCCTATTCTTTGAGGAAATTAACCATGCTGGTGCCGGCGGGTTGTGGGCGGAGCTTGTAAGCAACAGAGGTTTTGAAGCTGGGGGACAAAACACTCCTTCAAATATTGATCCTTGGTCTATACTTGGCAATGGATCATTGTTGATTGTATCAACTGACCGTTCATCATTGTTCGATCGAAATAAAATAGCACTTCGCATGGAGGTGCTCTGTGACAGAGAAGGCACTAATATCTGTCCAGCTGGAGGAGTTGGTATTTATAACCCGGGATTCTGGGGCATGAATATTGAAACAGGGAAGATCTACAAAGCCGTTATGTATATTCGATCATCAGGATCCACTAACTTATCTGTATCATTGACAGATTCAACCGGGTTACAAATACTGGCTACTACAAACATTGTAGATGTTGATTTTGCAAATTGGACAAAGGTGGAGGTTTTGTTGGAAGCAAAAGATTCCAATGATAATTCAAGACTGCAGTTGACAACATCCCGTAAAGGAGTTATATGGTTTGACCAAGTGTCACTGATGCCTTTGGACACATACAAGGGACATGGTTTCCGAAATGATCTCTTTACAATGCTTGCAGATCTGAAACCAGGATTTATTAGATTTCCAGGTGGATGTTTCGTTGAAGGTGAATGGTTAAGAAATGCATTTAGATGGAAAGAAACTATTGGGGCGTGGGAAGAGAGGCCTGGACATTTTGGTGATGTTTGGATGTACTGGACTGATGACGGACTAGGCCATTTTGAGTTTCTCCAGCTGGCGGAGGATTTAGGTGCATTGCCAATCTGGGTATTCAACAATGGAATCAGTCATCAGGATGAAGTGGAGACTTCCAGCATTTCACCTTTTCTGCAGGAAATCCTTGATGGTATCGAGTTTGCGAGAGGTGATTCAGATTCAAAGTGGGGTTCTGTTCGAGCTGCGATGGGACACCCAGCACCTTTTGACTTGAGATATGTTGCTATTGGGAATGAGGATTGTGGGAAGAAGTACTATCGTGGAAATTACCTCAAGTTCTACTATGCTATAAAAAGTGCCTATCCCGACATCAAAATGATTTCTAATTGTGACGGATCTTCGAAACCATTGGATCATCCTGCTGATATGTATGATTTTCACATTTACAGCGATGCAAACACTGTGTTTTCAATGTCTCGTACTTTTGACCATACATCACGTAACGGTCCAAAGGCTTTTGTGAGTGAGTACGCCGTAACTGGGAAAGATGCTGGTACGGGAAGTCTTTTGTCAGCGCTGGCTGAAGCTGGATTCCTTATTGGGCTAGAAAAGAATAGTGATACTGTTGAAATGGCAAGCTATGCGCCTCTTTTTGTGAATGTCAATGATAGGAGGTGGAACCCAGATGCAATCGTGTTTAATTCATCGCATCTGTATGGAACTCCTAGTTACTGGATGCAACGATTTTTTACGGAGTCAAATGGAGCAACTCTTCTTAATTCAACACTAAAATCCGATACTTCGATTTCCTCTCTTGTAGCTTCTGCTATTACTTGGCATAACTCGGGGGATAACAAGAATTATTTGAGAGTAAAGATTGTGAACTTTGGGAGCAACCCGGTTAATCTGAAAATCTATACTGACGGGTTGGAGCTCAACTCAAAAGAATCAAATTGGTCGACGAAGACTGTACTCACATCTAGTAATACAATGGATGAGAATTCCTTCAAAGAACCAAAGAAGAGAGGAGAGAAGTGGAGTGGTTTCACATCTTCAAGGATGACTTCTCTGAATACAACATGGTTACCCAACTCTTTTCAGCTCCGTTTAGCGTTTAACTGCCGAAAGTCTCCTCCTGTTTTGTTACGAATGCGTGTTCACAAGCTAGATTGCCAGATTTGCTTGTTTCCTGTTGCTGGAGAGAGTGGTAAAAATGGTAATAGATCACAATGGCGACGGATTGGGAATTCATCCATGAATTCTAATTCTTCTATTGATGCTTTCTCTGGATGGTCGTCTGCTACTGGTACCGATGGCGGTGAAGAACAATCCACTGAGCCGCCACGGAAACGGTGGCCTGGAGGGATTGTAGGAGCAGGAGTAGCTGGGTTTGTTCTTGTTGCCGGACTTGCCTTTGCAATGTTGTCTATGAGCAAGGGAACTTCCAGACCAAAACAACAGATGGAACCCTTGACCACACAGGAAGAAATGTCGTTTGTCTCTGCTGACCAGAGTGATATTGTTGAAGAGGACGAAAATGAGGGCAAAAATGCAACCATTGACAGTTTTAGCCTGGAAAGCAAGACAGGCACAAATAAGGATTCTTCTTCTTATGCAGAAACTAATGAAGCTACTATAAAAAATGACCTTTTTCGTGATATTGATGTGGAGTACACATCCAATGGCAGCGACGCCATTAAAAAATCATCCACTCAACAAGAATTGGAAATTGAATCAGATGTTGATGACATTTCAATTACCCCCTTAGGCACACCTAAGTTGCCTGAATCTGAGGTTTCTGGCAACCCTTTTGCTGCCTCAAGTTTCGTGGATTCAGATGGCAGCTTTGATGCTGAGAAAAAAGAAGCGAGTATTGAAGCAAAAGAGAATCCTATTGATCCTGGGCTTACCAGCTCTTTGGTCCCTGATGATTATCCAACAATTCTCAGCACTGAACCCCAGGAGGTAGTGCCTGGTTCAAATGGAGCAGAAGGTTCCAACTTTTCATTGGATTCATCTTCCAGCTTCAGTACCGGTACCCCTGAGGATCCTTTGGATATCAAAGTCTTGGTCATTCCAGAGCTGTATGCAGTTGTAGAGCCCCAGATTGCGAGCAAAGAGCATGTAGAGACTGTAAATTCACTTTCAAGCAAAGAAGAATATGACTCGAGCAGCAAAATGCCAGAGATCTCATCTGAGGGAAATAAGTCATCCCTGGAAGTAGATAATCTAAATGGAGTTGGGTCATCTGGAACTTCGGTATCATCAGCATTAGTTTATCCTTTTGCAAATACACCAAGTGAGAATGATCATAATGACATCAATGGGAGCAGATCATTATTTGACTCAACGAGTAATGGTACGTTCTCTTCTGCTGGAATACCTGCTCCTTCTGTCGTTTCTCCAAGTCTAAAGGCTCGTCCGGGGAAGGTTTTAGTTCCTGCAGTTATTGATCAAGTTCAGGGGCAGGCACTAGCCACATTGCAAGTTCTGAAGAATGGCTTTCCACCGATACATCACATTAACAATGCTGATGTAGAGGATTTTGCTCGGACAGAGGTTGTTGAGGCTGATGTTCAACCAGGTGATTTATGTACTCGTCGTGAATATGCTCGCTGGTTGGTTTCAGGCAGCAGTGCTCTCTCGAGGAGCTCAGTTTCAAAGGTGTACCCTGCTATGTATATTGAGAATGTCACAGAACTTGCATTTGATGATATTACGCCTGAAGATCCTGACTTTCCTTCCATTCAAGGCTTGGCAGAAGCAGGACTTATATCTAGCAAGCTTTCAAGACGTGATATGAGTTCTTCATTAGATGAAGAAGAGAGTCCCCTCTACTTCTCTCCTGAAAGCCCTTTGTCTCGTCAGGATCTTGTGAGTTGGAAGATTTCCCTGGAGAAAAGACAGCTTCCAATAACTGAGAGAAAGATCCTACAAGAAGTTTCGGGTTTTATAGACATTGATAGGATCCACCCCGATGCATTACCTGCACTTGTGTCCGACTTGTCAGCAGGAGAGCAGGGAATAGTAGCCCTCGCATTTGGTTACACAAGACTATTCCAGCCAAATAAGCCGGTTACAAAAGCCCAAGCTGCTATTGCTCTTGCTACCGGTGAAGCCTCCGATATAGTGAGTGAGGAACTCGCACGTATTGAAGCCGAGTCTATGGCAGAAAAGGCTGTTGCTGCACACAGTGCAATAGTAGATCTAGTTGAGAAGGATGTGAATGCAAGTTTTGAGGAGGAGCTTTCATTGGAAAAAGAAAAGATTAATGCTGTACAGAAATTGGCTGAAGAGACAATGAAAGAATTGGAGACGTTAAGATCCAAGAGAGAGGAAGAGAACATTAGTTTAATGAAGGAACGGGCCACTGTTGATTCAGAAATGGAAGTACTTTCAAGGTTAAGGATTGAGGTGGAGGAACAATTGCAGAGTGTAATGAGTAACAAAATTGAGATATCATATGAAAAGGAAAGGCTTAGCACACTGCGGAGAGATGCGGAAACAGAGAACCAGGAGATTGCTCGGATAAAGTATGAACTAGAGGTTGAAAGAAAAGCCTTGTGCATGGCCAGGGCTTGGGCTGAAGATGAGGCGAAAAGAGCAAGAGAGCAAGCAAAAGTCTTGGAGGAGGCCAGAGAACACTGGGAGGGTCAAGGCATCAAGGTTGTTGTTGACAATGACCTGCGTGAAGAGGCTGACACAGAAAGTACGTGGCTTAATACTGTAAAACAGTTCTCCCCTGAAGGAAGTTTAAGCAGAGCTGAAAATTTGGTGGAGAAGCTAAAGGAAATGGCAGCTGTTGTACAAGGGAAATCAAGAAATACAATTGAGAAGGCAATGGAGAAGATAGTATTGTTGATATCTGTATTGAAGGAATGGACATTGAAAGTTGGGAGGCAGGCAGGAGAGCTGAGAAATGGTGCAGTGTCTAAAGTAGGTGGGTCTTTGGAAGAGTTGCAACAGAGCTCAGCGGAGCTTAGTTTGGCTGTGAAGGAAGCGGCAAAGCGTGTTGCAGGTGACTGCAGGGAGGGAGTTGAGAAATTGACGCACAAGTTCAAGACATGA

Network for GWHGAAZE003558

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06964.13	Alpha-L-AF_C	459	627	1.40E-30

Protein Sequence

>GWHPAAZE003561
MGSNCAPYRLLLLFFTGFCALCQCSTELHADQTALLFVNASEASARKIPETLFGLFFEEINHAGAGGLWAELVSNRGFEAGGQNTPSNIDPWSILGNGSLLIVSTDRSSLFDRNKIALRMEVLCDREGTNICPAGGVGIYNPGFWGMNIETGKIYKAVMYIRSSGSTNLSVSLTDSTGLQILATTNIVDVDFANWTKVEVLLEAKDSNDNSRLQLTTSRKGVIWFDQVSLMPLDTYKGHGFRNDLFTMLADLKPGFIRFPGGCFVEGEWLRNAFRWKETIGAWEERPGHFGDVWMYWTDDGLGHFEFLQLAEDLGALPIWVFNNGISHQDEVETSSISPFLQEILDGIEFARGDSDSKWGSVRAAMGHPAPFDLRYVAIGNEDCGKKYYRGNYLKFYYAIKSAYPDIKMISNCDGSSKPLDHPADMYDFHIYSDANTVFSMSRTFDHTSRNGPKAFVSEYAVTGKDAGTGSLLSALAEAGFLIGLEKNSDTVEMASYAPLFVNVNDRRWNPDAIVFNSSHLYGTPSYWMQRFFTESNGATLLNSTLKSDTSISSLVASAITWHNSGDNKNYLRVKIVNFGSNPVNLKIYTDGLELNSKESNWSTKTVLTSSNTMDENSFKEPKKRGEKWSGFTSSRMTSLNTTWLPNSFQLRLAFNCRKSPPVLLRMRVHKLDCQICLFPVAGESGKNGNRSQWRRIGNSSMNSNSSIDAFSGWSSATGTDGGEEQSTEPPRKRWPGGIVGAGVAGFVLVAGLAFAMLSMSKGTSRPKQQMEPLTTQEEMSFVSADQSDIVEEDENEGKNATIDSFSLESKTGTNKDSSSYAETNEATIKNDLFRDIDVEYTSNGSDAIKKSSTQQELEIESDVDDISITPLGTPKLPESEVSGNPFAASSFVDSDGSFDAEKKEASIEAKENPIDPGLTSSLVPDDYPTILSTEPQEVVPGSNGAEGSNFSLDSSSSFSTGTPEDPLDIKVLVIPELYAVVEPQIASKEHVETVNSLSSKEEYDSSSKMPEISSEGNKSSLEVDNLNGVGSSGTSVSSALVYPFANTPSENDHNDINGSRSLFDSTSNGTFSSAGIPAPSVVSPSLKARPGKVLVPAVIDQVQGQALATLQVLKNGFPPIHHINNADVEDFARTEVVEADVQPGDLCTRREYARWLVSGSSALSRSSVSKVYPAMYIENVTELAFDDITPEDPDFPSIQGLAEAGLISSKLSRRDMSSSLDEEESPLYFSPESPLSRQDLVSWKISLEKRQLPITERKILQEVSGFIDIDRIHPDALPALVSDLSAGEQGIVALAFGYTRLFQPNKPVTKAQAAIALATGEASDIVSEELARIEAESMAEKAVAAHSAIVDLVEKDVNASFEEELSLEKEKINAVQKLAEETMKELETLRSKREEENISLMKERATVDSEMEVLSRLRIEVEEQLQSVMSNKIEISYEKERLSTLRRDAETENQEIARIKYELEVERKALCMARAWAEDEAKRAREQAKVLEEAREHWEGQGIKVVVDNDLREEADTESTWLNTVKQFSPEGSLSRAENLVEKLKEMAAVVQGKSRNTIEKAMEKIVLLISVLKEWTLKVGRQAGELRNGAVSKVGGSLEELQQSSAELSLAVKEAAKRVAGDCREGVEKLTHKFKT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01209	abfA	Metabolic pathways	map01100
K01209	abfA	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0046373	biological_process	L-arabinose metabolic process
GO:0046556	molecular_function	alpha-L-arabinofuranosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.406
	SRR3591706	second leaf	19.297
	SRR3591707	mature leaf	12.721
	SRR3591708	Shoot apex	11.788
	SRR3591709	Stem	41.534
	SRR3591710	White floral bud	18.474
	SRR3591711	White flower	20.305
	SRR3591712	Green floral bud	33.383
	SRR3591713	Yellow flower	16.275
SRP173429	SRR8316895	Juvenile bud stage	19.695
	SRR8316896	Juvenile bud stage	42.056
	SRR8316897	Juvenile bud stage	24.011
	SRR8316894	Third green stage	18.659
	SRR8316900	Third green stage	44.600
	SRR8316901	Third green stage	37.814
	SRR8316898	Complete white stage	6.937
	SRR8316899	Complete white stage	19.975
	SRR8316903	Complete white stage	15.222
	SRR8316902	Silver flowering stage	8.254
	SRR8316904	Silver flowering stage	13.727
	SRR8316905	Silver flowering stage	6.194
	SRR8316906	Gold flowering stage	20.862
	SRR8316907	Gold flowering stage	18.501
	SRR8316908	Gold flowering stage	20.516
SRP132670	SRR6706286	Control	57.803
	SRR6706287	Light intensity 50%	49.341
	SRR6706288	Light intensity 20%	57.299
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.006
	CNS0095593	Slightly white alabastrum(diploid) 2	10.233
	CNS0095594	Slightly white alabastrum(diploid) 3	16.216
	CNS0095595	Whole white alabastrum(diploid) 2	11.078
	CNS0095596	Whole white alabastrum(diploid) 3	11.427
	CNS0095597	Whole white alabastrum(diploid) 4	11.041
	CNS0095598	Silvery flower (diploied) 1	20.265
	CNS0095599	Silvery flower (diploied) 2	13.954
	CNS0095600	Silvery flower (diploied) 3	22.494
	CNS0095601	Golden flower (diploid) 1	16.449
	CNS0095602	Golden flower (diploid) 2	26.419
	CNS0095603	Golden flower (diploid) 3	24.587
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.594
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.909
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.887
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.755
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.734
	CNS0095610	Silvery flower (tetraploid) 1	18.787
	CNS0095611	Silvery flower (tetraploid) 2	21.374
	CNS0095612	Silvery flower (tetraploid) 3	16.551
	CNS0095613	Golden flower (tetraploid) 1	8.081
	CNS0095614	Golden flower (tetraploid) 2	15.029
	CNS0095615	Golden flower (tetraploid) 3	13.426
CRA001975	CRR073297	Stem 1	22.427
	CRR073298	Stem 2	26.620
	CRR073299	Stem 3	22.052
	CRR073300	Leaf 1	20.616
	CRR073301	Leaf 2	18.422
	CRR073302	Leaf 3	15.930
	CRR073303	Juvenile bud 1	13.576
	CRR073304	Juvenile bud 2	9.311
	CRR073305	Juvenile bud 3	18.954
	CRR073306	Third green 1	7.285
	CRR073307	Third green 2	4.818
	CRR073308	Third green 3	5.867
	CRR073309	Second white 1	6.047
	CRR073310	Second white 2	8.798
	CRR073311	Second white 3	6.936
	CRR073312	Silver flowering 1	4.019
	CRR073313	Silver flowering 2	3.342
	CRR073314	Silver flowering 3	4.429
	CRR073315	Gold flowering 1	10.594
	CRR073316	Gold flowering 2	17.791
	CRR073317	Gold flowering 3	9.815
	CRR073318	Tawny withering 1	18.584
	CRR073319	Tawny withering 2	15.414
	CRR073320	Tawny withering 3	13.679