Gene detail

Detail information of GWHGAAZE003487

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84082.1	0	fructokinase [Actinidia chinensis]
COG	YP_002521328.1	2E-111	putative fructokinase
Swissprot	tr\|Q9FLH8\|SCRK7_ARATH	0	Probable fructokinase-7
trEMBL	tr\|S4SKP6\|S4SKP6_ACTCH	0	Fructokinase {ECO:0000313\|EMBL:AFO84082.1}
TAIR10	AT5G51830.1	2E-143	pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98848225	98850863	+
GWHAAZE00000001	mRNA	98848225	98850863	+
GWHAAZE00000001	exon	98848225	98848404	+
GWHAAZE00000001	exon	98849010	98849222	+
GWHAAZE00000001	exon	98849322	98849519	+
GWHAAZE00000001	exon	98849670	98849810	+
GWHAAZE00000001	exon	98850013	98850129	+
GWHAAZE00000001	exon	98850303	98850863	+
GWHAAZE00000001	CDS	98848225	98848404	+
GWHAAZE00000001	CDS	98849010	98849222	+
GWHAAZE00000001	CDS	98849322	98849519	+
GWHAAZE00000001	CDS	98849670	98849810	+
GWHAAZE00000001	CDS	98850013	98850129	+
GWHAAZE00000001	CDS	98850303	98850437	+
GWHAAZE00000001	three_prime_UTR	98850438	98850863	+

Transcript Sequence
>GWHTAAZE003493 TCACAAGATATCAATTCACTTGTAGTTTGCTTTGGGGAAATGCTGATTGACTTTGTCCCTACCGTTGGCGGAGTTTCGCTGGCAGAAGCACCCGCCTTCAAAAAAGCCCCAGGTGGTGCTCCTGCTAATGTTGCAGTTTGTGTATCAAGATTGGGAGGTTCTTCAGCTTTTATCGGAAAGGTGGGGGAGGATGAATTTGGGTACATGTTGGCCGAAATTTTGAAACAAAACAACGTCGACAATTCCGGCGTACGATTTGACCACAATGCAAGGACAGCACTGGCATTTGTTACACTAAGATCCGATGGCGAGCGCGAGTTTCTATTTTTCCGCAACCCTAGTGCCGATATGCTTTTTCATGAATCAGAACTTGATGTAAATCTTATTAAGCAGGCAAAAATCTTCCACTATGGTTCAATTAGTTTGATTGAAGAACCATGTAGATCTACTCATCTTGCTGCAATGGCTGTTGCTAAAAAATCTGGCAGTATTTTGTCTTATGATCCAAATTTGAGATTGCCATTATGGCCATCAGCTGATGCTGCTAGAAAGGGCATAATGAGCATATGGGATCAAGCAGATGTTATCAAGATAAGTGAGGAAGAAATTTCCTTCTTGACTGGAGGTGATGATCCTTGTGACGACAATGTGGTGTTAAATAAGCTTTTTCACCCTAACCTTAAGCTTTTGCTTGTAAGTGAAGGAGCAGAAGGTTGTAGATATTACACCAAGCAATTTAAGGGTAGAGTCCCATCTGTTAAAGTAAAAGCTGTTGACACAACTGGTGCTGGTGATGCGTTTGTCGGTGGGATACTGAACATTTTAGCTTCAGACATGAATCTTTTCGAGGATGAGAAGAGACTACGAGAGGCTCTTTCCTTTGCAAATGCGTGTGGTGCCCTCACTGTTACACAGAGAGGAGCAATTCCTGCCATGCCCACTAAAGAGGCAGTCCTCCAAGTCTTGGGTAAAGTTGATGCGTGATGAAAAAAAATAAAAAAAAAATGATGCGTTCATCCTTTCTGTCGTCTAATAAGCTAATGTAGTCTTGTTTTCCTGAGCTTTTAAGGAAATAATGAGGAGTTGTTGCATTTTTCCGTCGTATTACCATGTTTCCTTCACATGAGTCCAAGCAGACAGATTCTATGAACTCTGCCTGCATACATTCTTGTCTGTATTTCTAATCGCTGTATATGAATCTCAAATAAAATGAGGGAACCTCCTTCTATTGTAGTGATATGAAGGATGATGTTACAAGTTTTCTCATAACAAATAGCATTTTTTCATACATTGTTAATAGTTTGTTGATGGATCTGAGAATGCTCAACTTATTAGAGAGAGATTTTGATTATTTGACTTTTGTATTGGGATGTTTGTAAAGAAATAATGATAGGGGATCTGTTGCTATCA

Network for GWHGAAZE003487

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00294.25	PfkB	7	314	2.30E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00847	E2.7.1.4, scrK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016301	molecular_function	kinase activity
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.742
	SRR3591706	second leaf	23.603
	SRR3591707	mature leaf	21.089
	SRR3591708	Shoot apex	34.979
	SRR3591709	Stem	23.777
	SRR3591710	White floral bud	51.608
	SRR3591711	White flower	43.284
	SRR3591712	Green floral bud	83.570
	SRR3591713	Yellow flower	33.737
SRP173429	SRR8316895	Juvenile bud stage	44.616
	SRR8316896	Juvenile bud stage	62.736
	SRR8316897	Juvenile bud stage	27.494
	SRR8316894	Third green stage	29.184
	SRR8316900	Third green stage	109.747
	SRR8316901	Third green stage	100.817
	SRR8316898	Complete white stage	45.963
	SRR8316899	Complete white stage	132.360
	SRR8316903	Complete white stage	63.557
	SRR8316902	Silver flowering stage	28.850
	SRR8316904	Silver flowering stage	42.135
	SRR8316905	Silver flowering stage	19.695
	SRR8316906	Gold flowering stage	53.022
	SRR8316907	Gold flowering stage	45.697
	SRR8316908	Gold flowering stage	58.206
SRP132670	SRR6706286	Control	64.033
	SRR6706287	Light intensity 50%	67.223
	SRR6706288	Light intensity 20%	75.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.802
	CNS0095593	Slightly white alabastrum(diploid) 2	78.199
	CNS0095594	Slightly white alabastrum(diploid) 3	70.753
	CNS0095595	Whole white alabastrum(diploid) 2	78.392
	CNS0095596	Whole white alabastrum(diploid) 3	89.223
	CNS0095597	Whole white alabastrum(diploid) 4	83.169
	CNS0095598	Silvery flower (diploied) 1	57.005
	CNS0095599	Silvery flower (diploied) 2	68.254
	CNS0095600	Silvery flower (diploied) 3	108.769
	CNS0095601	Golden flower (diploid) 1	57.329
	CNS0095602	Golden flower (diploid) 2	83.244
	CNS0095603	Golden flower (diploid) 3	80.817
	CNS0095604	Slightly white alabastrum(tetraploid) 1	80.873
	CNS0095605	Slightly white alabastrum(tetraploid) 2	78.872
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	83.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	90.257
	CNS0095609	Whole white alabastrum(tetraploid) 3	114.383
	CNS0095610	Silvery flower (tetraploid) 1	107.056
	CNS0095611	Silvery flower (tetraploid) 2	125.215
	CNS0095612	Silvery flower (tetraploid) 3	84.323
	CNS0095613	Golden flower (tetraploid) 1	61.351
	CNS0095614	Golden flower (tetraploid) 2	82.932
	CNS0095615	Golden flower (tetraploid) 3	52.680
CRA001975	CRR073297	Stem 1	36.505
	CRR073298	Stem 2	34.297
	CRR073299	Stem 3	38.779
	CRR073300	Leaf 1	65.375
	CRR073301	Leaf 2	55.977
	CRR073302	Leaf 3	68.252
	CRR073303	Juvenile bud 1	74.897
	CRR073304	Juvenile bud 2	76.501
	CRR073305	Juvenile bud 3	70.638
	CRR073306	Third green 1	21.961
	CRR073307	Third green 2	25.166
	CRR073308	Third green 3	23.230
	CRR073309	Second white 1	37.545
	CRR073310	Second white 2	22.300
	CRR073311	Second white 3	21.662
	CRR073312	Silver flowering 1	29.703
	CRR073313	Silver flowering 2	32.381
	CRR073314	Silver flowering 3	27.191
	CRR073315	Gold flowering 1	25.417
	CRR073316	Gold flowering 2	27.581
	CRR073317	Gold flowering 3	23.506
	CRR073318	Tawny withering 1	40.999
	CRR073319	Tawny withering 2	46.885
	CRR073320	Tawny withering 3	30.284