Gene detail

Detail information of GWHGAAZE003432

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009795630.1	0	PREDICTED: autophagy-related protein 3 [Nicotiana sylvestris]
Swissprot	tr\|Q0WWQ1\|ATG3_ARATH	0	Autophagy-related protein 3
trEMBL	tr\|A0A022PWM9\|A0A022PWM9_ERYGU	0	Autophagy-related protein 3 {ECO:0000256\|RuleBase:RU004405}
TAIR10	AT5G61500.1	2E-152	autophagy 3 (APG3)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97738572	97742637	+
GWHAAZE00000001	mRNA	97738572	97742637	+
GWHAAZE00000001	exon	97738572	97738732	+
GWHAAZE00000001	exon	97739598	97739668	+
GWHAAZE00000001	exon	97740104	97740220	+
GWHAAZE00000001	exon	97740295	97740461	+
GWHAAZE00000001	exon	97741008	97741093	+
GWHAAZE00000001	exon	97741251	97741302	+
GWHAAZE00000001	exon	97741502	97741567	+
GWHAAZE00000001	exon	97741696	97741764	+
GWHAAZE00000001	exon	97741838	97741965	+
GWHAAZE00000001	exon	97742057	97742160	+
GWHAAZE00000001	exon	97742355	97742637	+
GWHAAZE00000001	CDS	97738572	97738732	+
GWHAAZE00000001	CDS	97739598	97739668	+
GWHAAZE00000001	CDS	97740104	97740220	+
GWHAAZE00000001	CDS	97740295	97740461	+
GWHAAZE00000001	CDS	97741008	97741093	+
GWHAAZE00000001	CDS	97741251	97741302	+
GWHAAZE00000001	CDS	97741502	97741567	+
GWHAAZE00000001	CDS	97741696	97741764	+
GWHAAZE00000001	CDS	97741838	97741965	+
GWHAAZE00000001	CDS	97742057	97742153	+
GWHAAZE00000001	three_prime_UTR	97742154	97742160	+
GWHAAZE00000001	three_prime_UTR	97742355	97742637	+

Transcript Sequence
>GWHTAAZE003438 ATGGTACTATCACAGAAGATCCACGAGGCATTCAAGGGTACGGTGGAGAGGATAACAAGTCCTCGCACAGTCTCTGCCTTCAAAGAGAAGGGCGTTCTTAGCATCAACGAGTTCCTCATAGCCGGTGACAATCTCGTCTCCAAGTGCCCTACCTGGTCCTGGGAATCAGGGGAGCCAAGCAAGAGGAAGTCATATCTACCCCATGATAAACAATTCCTGATTACTCGAAATGTTCCTTGTCTACGGAGAGCTGCATCTGTAGAAGAAGAGTATGAGGCTGCGGGAGGTGAAGTTTTACTTGATAATGAAGACAATGATGGCTGGTTGGCAACTCATGGTAAACCAAAAGAAAGCAAATGCGACGAAGAGGATGATTTGCCTTCCATGGAGACACTAGAAATTGGTAAGAAGAATACAATTCAGTCCATCTCTTCATACTTTGGAGGTGAGGAGGAGGAAGACATTCCAGACATGGCTGGGTATGAAGATGCTGACAACCTTATTGAAAATGATCCTGCGATACTTCAGACTACATATCTTGTGGCTCATGAACCTGATGATGACAACATCCTAAGAACCCGAACATATGATGTCAGCATTTCGTATGATAAATATTATCAAACTCCTCGGGTGTGGCTTACTGGATATGATGAGTCAAGGATGCTTCTCCAGCCCGAACTTGTACTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGGAAACTAAGTTCTTAGCTGCCAATCTCATTCTGTATCGTAGTTGCCAATCTCATTCTGTAATCTGTATGGTAACTATTGAGGACCATCCACACTTGCCTGGGAAACATGCATCTGTGCATCCATGTCGCCATGGTGCTGTGATGAAGAAAATCATTGACGTTCTAATGTCACGAGGAGTTGAGCCTGAAGTTGACAAGTACCTGTTCTTGTTCTTGAAATTTGTGGCTTCCGTGATCCCAACTATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCTCCAGCACTTGATTTGAAGGTTTATATCAGGAATGAAGATGCAGTATATAATGAGAAGTTAAAGCCGTTGATTCTGCTGCAACTTCGTCTTTGTACATACTGGAGAGAAGTGAATCCTATTTAAAAAAAGAAAAAAAGAAGGAAGTGTATTTAGTGACATCCAGTCAGTCATCTTACGTTGTAAATCAACCACTTGGTGTGCTCTGTGGTTCTCTCTTCAACACCTCAATTTACTGATTTGTTAAATACTAATTATCTGTAAATTTTTATGTTGAAAATTTACCTTATGTTATTTAAAATAT

Network for GWHGAAZE003432

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03987.16	Autophagy_act_C	37	326	3.20E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08343	ATG3	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.572
	SRR3591706	second leaf	24.631
	SRR3591707	mature leaf	27.650
	SRR3591708	Shoot apex	37.899
	SRR3591709	Stem	48.646
	SRR3591710	White floral bud	34.414
	SRR3591711	White flower	33.557
	SRR3591712	Green floral bud	29.466
	SRR3591713	Yellow flower	36.626
SRP173429	SRR8316895	Juvenile bud stage	19.808
	SRR8316896	Juvenile bud stage	31.956
	SRR8316897	Juvenile bud stage	10.653
	SRR8316894	Third green stage	11.901
	SRR8316900	Third green stage	30.953
	SRR8316901	Third green stage	29.957
	SRR8316898	Complete white stage	16.893
	SRR8316899	Complete white stage	56.722
	SRR8316903	Complete white stage	29.145
	SRR8316902	Silver flowering stage	14.430
	SRR8316904	Silver flowering stage	19.569
	SRR8316905	Silver flowering stage	9.784
	SRR8316906	Gold flowering stage	38.653
	SRR8316907	Gold flowering stage	37.171
	SRR8316908	Gold flowering stage	29.427
SRP132670	SRR6706286	Control	22.954
	SRR6706287	Light intensity 50%	23.733
	SRR6706288	Light intensity 20%	23.557
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.188
	CNS0095593	Slightly white alabastrum(diploid) 2	25.148
	CNS0095594	Slightly white alabastrum(diploid) 3	23.790
	CNS0095595	Whole white alabastrum(diploid) 2	20.278
	CNS0095596	Whole white alabastrum(diploid) 3	19.085
	CNS0095597	Whole white alabastrum(diploid) 4	24.835
	CNS0095598	Silvery flower (diploied) 1	27.568
	CNS0095599	Silvery flower (diploied) 2	24.139
	CNS0095600	Silvery flower (diploied) 3	34.650
	CNS0095601	Golden flower (diploid) 1	31.678
	CNS0095602	Golden flower (diploid) 2	35.291
	CNS0095603	Golden flower (diploid) 3	35.269
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.704
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.648
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.728
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.794
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.216
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.396
	CNS0095610	Silvery flower (tetraploid) 1	39.861
	CNS0095611	Silvery flower (tetraploid) 2	39.483
	CNS0095612	Silvery flower (tetraploid) 3	31.328
	CNS0095613	Golden flower (tetraploid) 1	26.968
	CNS0095614	Golden flower (tetraploid) 2	32.071
	CNS0095615	Golden flower (tetraploid) 3	35.472
CRA001975	CRR073297	Stem 1	31.566
	CRR073298	Stem 2	34.819
	CRR073299	Stem 3	39.128
	CRR073300	Leaf 1	35.372
	CRR073301	Leaf 2	32.270
	CRR073302	Leaf 3	33.558
	CRR073303	Juvenile bud 1	38.245
	CRR073304	Juvenile bud 2	30.734
	CRR073305	Juvenile bud 3	42.609
	CRR073306	Third green 1	13.875
	CRR073307	Third green 2	13.224
	CRR073308	Third green 3	14.502
	CRR073309	Second white 1	18.047
	CRR073310	Second white 2	19.119
	CRR073311	Second white 3	15.570
	CRR073312	Silver flowering 1	14.930
	CRR073313	Silver flowering 2	14.351
	CRR073314	Silver flowering 3	16.966
	CRR073315	Gold flowering 1	32.938
	CRR073316	Gold flowering 2	47.051
	CRR073317	Gold flowering 3	38.843
	CRR073318	Tawny withering 1	38.717
	CRR073319	Tawny withering 2	31.447
	CRR073320	Tawny withering 3	35.591