Gene detail

Detail information of GWHGAAZE003407

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KFK25129.1	0	hypothetical protein AALP_AA8G069800 [Arabis alpina]
COG	YP_634010.1	2E-164	glutamate dehydrogenase
Swissprot	tr\|Q38946\|DHE2_ARATH	0	Glutamate dehydrogenase 2
trEMBL	tr\|A0A087G5H7\|A0A087G5H7_ARAAL	0	Glutamate dehydrogenase {ECO:0000256\|PIRNR:PIRNR000185}
TAIR10	AT5G07440.2	0	glutamate dehydrogenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97339479	97343732	+
GWHAAZE00000001	mRNA	97339479	97343732	+
GWHAAZE00000001	exon	97339479	97339824	+
GWHAAZE00000001	exon	97340062	97340175	+
GWHAAZE00000001	exon	97341860	97342081	+
GWHAAZE00000001	exon	97342195	97342269	+
GWHAAZE00000001	exon	97342509	97342625	+
GWHAAZE00000001	exon	97342724	97342971	+
GWHAAZE00000001	exon	97343120	97343195	+
GWHAAZE00000001	exon	97343275	97343361	+
GWHAAZE00000001	exon	97343547	97343732	+
GWHAAZE00000001	five_prime_UTR	97339479	97339716	+
GWHAAZE00000001	CDS	97339717	97339824	+
GWHAAZE00000001	CDS	97340062	97340175	+
GWHAAZE00000001	CDS	97341860	97342081	+
GWHAAZE00000001	CDS	97342195	97342269	+
GWHAAZE00000001	CDS	97342509	97342625	+
GWHAAZE00000001	CDS	97342724	97342971	+
GWHAAZE00000001	CDS	97343120	97343195	+
GWHAAZE00000001	CDS	97343275	97343361	+
GWHAAZE00000001	CDS	97343547	97343732	+

Transcript Sequence
>GWHTAAZE003413 CATCTGTAATCTTTCCAACAAACTCTTTAGCGTGTGTTCACCAGTCACCCCACATTTCACTCCTATCTTCCGCATTCTCACTCTCTCTATACAAACATACAACCCCCTTTGCACATTCTTGTGTCCATATACACACAAAAACACAGACCCGCACAGTTAGTTTACTTGTCCAATCTAGCAAGCATCAAAAGACTCTATTATTAGTTAAGTCTGATACATGCATTTACATTAGACAAAGATGAACGCTCTCGCGGCTACAAACAGCAACTTTCGGAATGCTGCTCGAATTCTCGGCTTGGACTCTAAGATCGAAAAGAGTCTTTTGATCCCATTCAGAGAAATCAAGGTGGAGTGTACACTCCCCAAGGATGACGGCACTCTGGTGTCGTTCGTTGGATTCAGAGTCCAACATGACAATGCTCGTGGCCCGATGAAAGGAGGGATTAGATACCATCCTGAGGTTGACCCTGATGAGGTAAATGCTCTGGCTCAACTAATGACTTGGAAGACTGCTGTAGCAGACATTCCCTACGGGGGAGCAAAGGGTGGAATTGGGTGCACACCCAAGGATTTAAGCAACAGTGAGTTAGAACGTCTTACTCGTGTCTTCACTCAAAAGATACACGATCTTATTGGGGTTCAGACTGATGTCCCAGCCCCAGATATGGGGACTAATGCCCAGACTATGGCATGGATTTTAGATGAGTACTCAAAGTTTCATGGTCACTCACCAGCTGTTGTAACTGGAAAGCCCACAGATCTTGGTGGATCACTGGGAAGGGAGGCCGCAACTGGGCGTGGTGTTGTTTTCGCCATGGAAGCGTTACTAGCTGAATATGGGAAGTCAATTAAGGGTCTAACATTTGTTATTCAAGGTTTTGGAAATGTGGGATCGTGGGCAGCAAGGCTCATTCACGAAAGAGGTGGTAAGGTGATTGCGGTTAGTGACATTACTGGGGCAGTTAAGAACCCAAATGGGATTGATATTCCATCTTTGCTTAGCCATAAAGAAGCAACTGGGAGCTTAGCTAATTTCAGCAGTGGAGATGCCATCGATTCAAACGAGTTGCTTGTACAGGAATGTGATGTTCTCATCCCTGTGCTCGGTGGGGTTCTTAACAGAGAAAATGCAGGAAATGTTAGGGCCAAGTTCATCGTAGAAGCAGCAAATCATCCTACTGATCCAGATGCAGATGAGATACTATCTAAGAAAGGAGTTGTAATACTGCCTGATATATATGCAAATGCTGGAGGTGTCACCGTCAGCTATTTTGAATGGGTTCAGAATATTCAAGGTTTTATGTGGGATGAAGAGAAGGTGAACGAGGAGCTCAAGAAATACATGACAAGAGCTTTCCATAACATTAAGAACATGTGTCACTCCCACAATTGCAACCTTCGGATGGGTGCATTCACACTCGGGTTGAACCGCGTTGCGCGAGCCACCAATCTAAGGGGTTGGGGAGCTTAA

Network for GWHGAAZE003407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02812.19	ELFV_dehydrog_N	33	159	1.20E-50
PF00208.22	ELFV_dehydrog	176	407	3.40E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00261	GLUD1_2, gdhA	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220
		D-Glutamine and D-glutamate metabolism	map00471
		Necroptosis	map04217
		Proximal tubule bicarbonate reclamation	map04964

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0016639	molecular_function	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.462
	SRR3591706	second leaf	0.214
	SRR3591707	mature leaf	0.449
	SRR3591708	Shoot apex	0.419
	SRR3591709	Stem	2.879
	SRR3591710	White floral bud	9.644
	SRR3591711	White flower	5.719
	SRR3591712	Green floral bud	5.261
	SRR3591713	Yellow flower	2.649
SRP173429	SRR8316895	Juvenile bud stage	22.775
	SRR8316896	Juvenile bud stage	60.653
	SRR8316897	Juvenile bud stage	23.602
	SRR8316894	Third green stage	8.615
	SRR8316900	Third green stage	1.669
	SRR8316901	Third green stage	3.109
	SRR8316898	Complete white stage	0.890
	SRR8316899	Complete white stage	0.248
	SRR8316903	Complete white stage	1.695
	SRR8316902	Silver flowering stage	2.604
	SRR8316904	Silver flowering stage	3.402
	SRR8316905	Silver flowering stage	1.739
	SRR8316906	Gold flowering stage	2.758
	SRR8316907	Gold flowering stage	3.004
	SRR8316908	Gold flowering stage	1.620
SRP132670	SRR6706286	Control	8.781
	SRR6706287	Light intensity 50%	8.295
	SRR6706288	Light intensity 20%	5.313
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.417
	CNS0095593	Slightly white alabastrum(diploid) 2	1.710
	CNS0095594	Slightly white alabastrum(diploid) 3	15.200
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.253
	CNS0095597	Whole white alabastrum(diploid) 4	0.686
	CNS0095598	Silvery flower (diploied) 1	2.280
	CNS0095599	Silvery flower (diploied) 2	3.083
	CNS0095600	Silvery flower (diploied) 3	5.672
	CNS0095601	Golden flower (diploid) 1	1.517
	CNS0095602	Golden flower (diploid) 2	1.364
	CNS0095603	Golden flower (diploid) 3	1.421
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.396
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.409
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.338
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.467
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.427
	CNS0095610	Silvery flower (tetraploid) 1	5.811
	CNS0095611	Silvery flower (tetraploid) 2	5.661
	CNS0095612	Silvery flower (tetraploid) 3	11.307
	CNS0095613	Golden flower (tetraploid) 1	2.856
	CNS0095614	Golden flower (tetraploid) 2	1.558
	CNS0095615	Golden flower (tetraploid) 3	1.109
CRA001975	CRR073297	Stem 1	63.199
	CRR073298	Stem 2	63.157
	CRR073299	Stem 3	81.557
	CRR073300	Leaf 1	0.251
	CRR073301	Leaf 2	0.789
	CRR073302	Leaf 3	1.711
	CRR073303	Juvenile bud 1	0.215
	CRR073304	Juvenile bud 2	0.231
	CRR073305	Juvenile bud 3	0.066
	CRR073306	Third green 1	4.595
	CRR073307	Third green 2	5.228
	CRR073308	Third green 3	4.413
	CRR073309	Second white 1	2.355
	CRR073310	Second white 2	2.772
	CRR073311	Second white 3	2.319
	CRR073312	Silver flowering 1	0.937
	CRR073313	Silver flowering 2	0.538
	CRR073314	Silver flowering 3	0.241
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.042
	CRR073317	Gold flowering 3	0.332
	CRR073318	Tawny withering 1	0.048
	CRR073319	Tawny withering 2	0.045
	CRR073320	Tawny withering 3	0.000