Gene detail

Detail information of GWHGAAZE003374

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076583.1	0	PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Sesamum indicum]
COG	YP_004626393.1	4E-71	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
Swissprot	tr\|Q949Q0\|GPDA2_ARATH	0	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic (Precursor)
trEMBL	tr\|V4TC95\|V4TC95_9ROSI	0	Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256\|RuleBase:RU361243}
TAIR10	AT2G40690.1	2E-150	NAD-dependent glycerol-3-phosphate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96817208	96819480	+
GWHAAZE00000001	mRNA	96817208	96819480	+
GWHAAZE00000001	exon	96817208	96817344	+
GWHAAZE00000001	exon	96817564	96817669	+
GWHAAZE00000001	exon	96817898	96818099	+
GWHAAZE00000001	exon	96818174	96818261	+
GWHAAZE00000001	exon	96818419	96818501	+
GWHAAZE00000001	exon	96818675	96818859	+
GWHAAZE00000001	exon	96818959	96819108	+
GWHAAZE00000001	exon	96819433	96819480	+
GWHAAZE00000001	CDS	96817208	96817344	+
GWHAAZE00000001	CDS	96817564	96817669	+
GWHAAZE00000001	CDS	96817898	96818099	+
GWHAAZE00000001	CDS	96818174	96818261	+
GWHAAZE00000001	CDS	96818419	96818501	+
GWHAAZE00000001	CDS	96818675	96818859	+
GWHAAZE00000001	CDS	96818959	96819108	+
GWHAAZE00000001	CDS	96819433	96819480	+

Transcript Sequence
>GWHTAAZE003380 GTGGTAGTGCTGGGAGGTGGATCATTTGGAACAGCAATGGCTGCCCATGTTGCAAGTAGAAAGGCTCAATTGGAAGTTAGCATGCTTGTACGAGATCCTCACGTATGTCAATCTATTAATGAGAAACACTATAATTGTAAGTACTTTCCAGAACACAAGCTACCAGGAAATGTCATCGCAACAACCGATGCCAAAACTGCTTTCTGCGCTGCCAACTTTTGCCTACATGCTGTACCAGTGCAGTTCAGCTCATCATTCTTGGAGAACATTGCCGATTATGTTGATCCAACTCTACCTTTCATATCCCTCAGCAAAGGCTTAGAGCTGAATACATTAAGGACGATGTCTCAAATAATTCCCCAAGCACTAAGAAATCCACGTCAGCCCTACATCGTGCTATCGGGACCTTCATTTGCATCGGAATTGATGAATAAATTGCCAACAGCAATGGTGGTGGCATCAAAAGACAAAAGAATGGCAAATGCAGTTCAACAGCTTCTAGCTTCTAGAAACCTGAGAATCAACACATCGAGTGATGTAACAGGGGTGGAAATTGCAGGTGCACTTAAGAATGTGCTAGCAATAGCAGCAGGTATCGTGGAAGGAATGAATCTTGTAATTGTGTTATGCTGTTGTCTTTCCAAAATGAAGATGGGGTCGAAGTCAACAACAATTACAGGTTTATCAGGAACCGGAGACATTATGCTTACATGTTTTGTGAATCTTTCGAGGAACAGAACAGTTGGAGTTCGTCTTGGCTCAGGGGAAAAACTCGATGATATACTCTCTTCCATGAATCAGGTTGCTGAAGGTGTATCAACGGCTGGAGCGGTGATTGCTTTGGCACAGAAATATAAGGTCAAAATGCCAGTTTTAACGGCAGTTGCTCGGATCATTGACAATGAACTAACCCCAAACAAAGCTGTTCTTGAATTAATGGGTCTTCCCCAGGAGCACGACTCTAGATCTACAATAGCATTGTACGGAAATTTTGAATGA

Network for GWHGAAZE003374

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01210.24	NAD_Gly3P_dh_N	1	159	6.00E-41
PF07479.15	NAD_Gly3P_dh_C	179	309	3.00E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00006	GPD1	Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		MAPK signaling pathway - yeast	map04011

Gene Ontology

GO term	Ontology	Name
GO:0006072	biological_process	glycerol-3-phosphate metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0046168	biological_process	glycerol-3-phosphate catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0009331	cellular_component	glycerol-3-phosphate dehydrogenase complex
GO:0004367	molecular_function	glycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.500
	SRR3591706	second leaf	17.740
	SRR3591707	mature leaf	10.610
	SRR3591708	Shoot apex	26.889
	SRR3591709	Stem	11.319
	SRR3591710	White floral bud	9.602
	SRR3591711	White flower	14.746
	SRR3591712	Green floral bud	9.520
	SRR3591713	Yellow flower	10.893
SRP173429	SRR8316895	Juvenile bud stage	6.599
	SRR8316896	Juvenile bud stage	8.880
	SRR8316897	Juvenile bud stage	3.800
	SRR8316894	Third green stage	4.347
	SRR8316900	Third green stage	10.652
	SRR8316901	Third green stage	7.956
	SRR8316898	Complete white stage	3.113
	SRR8316899	Complete white stage	8.456
	SRR8316903	Complete white stage	5.017
	SRR8316902	Silver flowering stage	6.444
	SRR8316904	Silver flowering stage	7.724
	SRR8316905	Silver flowering stage	2.382
	SRR8316906	Gold flowering stage	6.979
	SRR8316907	Gold flowering stage	9.997
	SRR8316908	Gold flowering stage	8.701
SRP132670	SRR6706286	Control	8.476
	SRR6706287	Light intensity 50%	8.561
	SRR6706288	Light intensity 20%	9.742
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.645
	CNS0095593	Slightly white alabastrum(diploid) 2	8.286
	CNS0095594	Slightly white alabastrum(diploid) 3	6.043
	CNS0095595	Whole white alabastrum(diploid) 2	5.731
	CNS0095596	Whole white alabastrum(diploid) 3	5.506
	CNS0095597	Whole white alabastrum(diploid) 4	5.712
	CNS0095598	Silvery flower (diploied) 1	10.766
	CNS0095599	Silvery flower (diploied) 2	5.829
	CNS0095600	Silvery flower (diploied) 3	5.661
	CNS0095601	Golden flower (diploid) 1	9.719
	CNS0095602	Golden flower (diploid) 2	4.765
	CNS0095603	Golden flower (diploid) 3	4.994
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.855
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.163
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.902
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.450
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.587
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.867
	CNS0095610	Silvery flower (tetraploid) 1	6.944
	CNS0095611	Silvery flower (tetraploid) 2	6.043
	CNS0095612	Silvery flower (tetraploid) 3	4.343
	CNS0095613	Golden flower (tetraploid) 1	4.037
	CNS0095614	Golden flower (tetraploid) 2	7.052
	CNS0095615	Golden flower (tetraploid) 3	4.514
CRA001975	CRR073297	Stem 1	14.477
	CRR073298	Stem 2	10.155
	CRR073299	Stem 3	8.483
	CRR073300	Leaf 1	8.419
	CRR073301	Leaf 2	9.462
	CRR073302	Leaf 3	5.824
	CRR073303	Juvenile bud 1	6.459
	CRR073304	Juvenile bud 2	4.255
	CRR073305	Juvenile bud 3	8.026
	CRR073306	Third green 1	1.191
	CRR073307	Third green 2	1.270
	CRR073308	Third green 3	1.752
	CRR073309	Second white 1	1.714
	CRR073310	Second white 2	1.539
	CRR073311	Second white 3	1.741
	CRR073312	Silver flowering 1	2.747
	CRR073313	Silver flowering 2	2.593
	CRR073314	Silver flowering 3	1.690
	CRR073315	Gold flowering 1	8.459
	CRR073316	Gold flowering 2	14.795
	CRR073317	Gold flowering 3	7.809
	CRR073318	Tawny withering 1	7.676
	CRR073319	Tawny withering 2	8.543
	CRR073320	Tawny withering 3	8.410