Gene detail

Detail information of GWHGAAZE003297

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP14022.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GV43\|PLCD6_ARATH	Phosphoinositide phospholipase C 6
trEMBL	tr\|A0A068V0D3\|A0A068V0D3_COFCA	Phosphoinositide phospholipase C {ECO:0000256\|RuleBase:RU361133}
TAIR10	AT2G40116.1	Phosphoinositide-specific phospholipase C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95551488	95557395	+
GWHAAZE00000001	mRNA	95551488	95557395	+
GWHAAZE00000001	exon	95551488	95551790	+
GWHAAZE00000001	exon	95553810	95554006	+
GWHAAZE00000001	exon	95554097	95554232	+
GWHAAZE00000001	exon	95554320	95554550	+
GWHAAZE00000001	exon	95554632	95554852	+
GWHAAZE00000001	exon	95555045	95555162	+
GWHAAZE00000001	exon	95555250	95555402	+
GWHAAZE00000001	exon	95555482	95555568	+
GWHAAZE00000001	exon	95557102	95557395	+
GWHAAZE00000001	CDS	95551488	95551790	+
GWHAAZE00000001	CDS	95553810	95554006	+
GWHAAZE00000001	CDS	95554097	95554232	+
GWHAAZE00000001	CDS	95554320	95554550	+
GWHAAZE00000001	CDS	95554632	95554852	+
GWHAAZE00000001	CDS	95555045	95555162	+
GWHAAZE00000001	CDS	95555250	95555402	+
GWHAAZE00000001	CDS	95555482	95555568	+
GWHAAZE00000001	CDS	95557102	95557395	+

Transcript Sequence
>GWHTAAZE003303 ATGTTTGGTTGTTTTAACAGGAAGTTTAAGATCAGCGAGGCGGGGCCTACCCCCGATGTAATAGAGGCGTTTGTAAAATACTCGAAGAAGGAATCCCATTTGACGGCCGACCAGATGCTTCGTTTTCTGATCGAGTTTCAGGGAGAGGAAGATTGGACCCTATCTGATGTCCACAAAATTATTCATGACGTGCTTCAACACCGTCACCACTCAACAACTATCTTCAGTAGTGACACCCTTACTCTTGATGATTTCTTTTATTATCTCTTTCACGACGATCTCAATGGCCCCATCAAAACCGAGGTACACCATGATATGACTGCTCCGTTGCAACATTATTTCATTTATACAGGTCACAATTCCTACCTGACAGGAAACCAACTGAGCAGTGATTGTAGTGATGTCCCGATAATAAAGGCTCTGGAAAGAGGTGTGAGGGCAATTGAACTTGATATATGGCCTAATTCTGCAAAAGATGGCATCAATGTTCTTCACGGAAGGACCCTGACTGCTCCTGTGCCACTTATCAAATGCTTGAAGTCCATTAAAGAGCACGCTTTTGTTAAATCTCCTTACCCCGTCATCATAACTTTAGAAGATCACCTTACCCCAAGCCTTCAGGCTAAGGTTGCAGAGATGCTTGTTGAAATTTTTGGAGATTCAATCTATTATCCTGAGGCGGATTGCATAGATGAATTCCCTTCACCCGAATCGCTAAAGCATCGTTTTATTCTTTCAACAAAACCCCCTAAAGAATACCTTGAATCAAAGAATTCTAAGGACAAGGAGACTTCACCAATGGGGAAGGATTCTTCGGAAGAGGAATTGACATCAGCATCAAGCGAACAACAAGATGCTATTGACAAGAACGAGAGTGACCCGGAGGATGAAGATGGGGATTCGAACCAGAGAAAATCATGTCAGCCTTGTGTGAATGAATATAAGCGTCTTATTGCAATTCATGCAGGGAAACCAAAGAAAGGTTTAAGACTGGCATTGACTGCTGGACTTGATAAAGTTAGACGTCTTAGTGTGAGTGAACAAGAACTTGAAAAGGCTGCAACTTCCTATGGACCAGATGTTGTGAGGTTCACGCAGAATAATCTTCTTAGAGTATATCCAAAAGGAACAAGAATTTCCTCCTCAAATTACAAGCCAGTTACTGGGTGGATGCATGGAGCCCAGATGGTTGCATTTAATATGCAGGGGTATGGTAAATTTCTCTGGTTGATGCATGGGATGTTTAGAGCCAATGGAGGCTGTGGTTATCTGTTGAAGCCTGATTTTTTGATAAAGAAAGGAGAAAGTGATGATGTTTTTGATCCTCGAGCACCATTACCGGTGAAGACAACTTTGAGGGTGAAAGTTTACATGGGGGACGGATGGCGTTTGGATTTTAGCCAAACACATTTTGATGCGTTCTCTCCACCAGACTTCTACACAAAGGTTCACATTTTTGGGGCGCCAGCGGACTTTGCAAAGAAGAAAACGAGGATAAAAGAGGATGACTGGGCGCCTACGTGGGACGAAGAGTTCACATTTCCGTTGACGGTGCCGGAGATAGCATTGCTTCGGATAGTAGTGCGAGAGTATGACAGGTCAGAGAAGGATGACTTTGGTGGACAGACGTGTTTGCCTATCTCGGAGCTGAGACCAGGGATCAGAGCTGTTCCACTTTATGACAAAAAGGGAAAGAAATTTAAATCCGTAAAACTTCTTATGCGGTTCGAATTCATATGA

Network for GWHGAAZE003297

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09279.12	EF-hand_like	19	94	2.60E-06
PF00388.20	PI-PLC-X	106	248	9.30E-47
PF00387.20	PI-PLC-Y	343	429	1.60E-27
PF00168.31	C2	451	552	3.60E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05857	PLCD	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0007165	biological_process	signal transduction
GO:0035556	biological_process	intracellular signal transduction
GO:0004435	molecular_function	phosphatidylinositol phospholipase C activity
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.347
	SRR3591706	second leaf	0.278
	SRR3591707	mature leaf	0.161
	SRR3591708	Shoot apex	1.499
	SRR3591709	Stem	7.056
	SRR3591710	White floral bud	10.757
	SRR3591711	White flower	1.099
	SRR3591712	Green floral bud	12.524
	SRR3591713	Yellow flower	0.535
SRP173429	SRR8316895	Juvenile bud stage	1.128
	SRR8316896	Juvenile bud stage	1.376
	SRR8316897	Juvenile bud stage	1.813
	SRR8316894	Third green stage	0.559
	SRR8316900	Third green stage	6.724
	SRR8316901	Third green stage	7.029
	SRR8316898	Complete white stage	0.035
	SRR8316899	Complete white stage	0.533
	SRR8316903	Complete white stage	0.117
	SRR8316902	Silver flowering stage	0.144
	SRR8316904	Silver flowering stage	0.473
	SRR8316905	Silver flowering stage	0.027
	SRR8316906	Gold flowering stage	0.345
	SRR8316907	Gold flowering stage	0.330
	SRR8316908	Gold flowering stage	0.551
SRP132670	SRR6706286	Control	3.153
	SRR6706287	Light intensity 50%	3.157
	SRR6706288	Light intensity 20%	2.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.746
	CNS0095593	Slightly white alabastrum(diploid) 2	3.405
	CNS0095594	Slightly white alabastrum(diploid) 3	2.488
	CNS0095595	Whole white alabastrum(diploid) 2	10.323
	CNS0095596	Whole white alabastrum(diploid) 3	12.229
	CNS0095597	Whole white alabastrum(diploid) 4	10.214
	CNS0095598	Silvery flower (diploied) 1	0.404
	CNS0095599	Silvery flower (diploied) 2	1.798
	CNS0095600	Silvery flower (diploied) 3	0.649
	CNS0095601	Golden flower (diploid) 1	0.643
	CNS0095602	Golden flower (diploid) 2	0.765
	CNS0095603	Golden flower (diploid) 3	0.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.652
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.475
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.992
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.833
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.223
	CNS0095610	Silvery flower (tetraploid) 1	0.793
	CNS0095611	Silvery flower (tetraploid) 2	1.137
	CNS0095612	Silvery flower (tetraploid) 3	2.831
	CNS0095613	Golden flower (tetraploid) 1	0.867
	CNS0095614	Golden flower (tetraploid) 2	0.844
	CNS0095615	Golden flower (tetraploid) 3	1.297
CRA001975	CRR073297	Stem 1	0.642
	CRR073298	Stem 2	0.799
	CRR073299	Stem 3	0.391
	CRR073300	Leaf 1	5.267
	CRR073301	Leaf 2	3.916
	CRR073302	Leaf 3	2.558
	CRR073303	Juvenile bud 1	6.127
	CRR073304	Juvenile bud 2	4.578
	CRR073305	Juvenile bud 3	1.078
	CRR073306	Third green 1	2.165
	CRR073307	Third green 2	3.047
	CRR073308	Third green 3	1.573
	CRR073309	Second white 1	0.252
	CRR073310	Second white 2	0.742
	CRR073311	Second white 3	1.062
	CRR073312	Silver flowering 1	2.103
	CRR073313	Silver flowering 2	1.884
	CRR073314	Silver flowering 3	1.077
	CRR073315	Gold flowering 1	2.413
	CRR073316	Gold flowering 2	0.695
	CRR073317	Gold flowering 3	1.155
	CRR073318	Tawny withering 1	2.609
	CRR073319	Tawny withering 2	4.624
	CRR073320	Tawny withering 3	2.486