Gene detail

Detail information of GWHGAAZE003261

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	Q00265.1PCNA2_DAUCA	4.0387E-159	RecName: Full=Proliferating cell nuclear antigen large form; Short=PCNA; AltName: Full=Cyclin [Daucus carota]
COG	YP_004484599.1	2E-15	DNA polymerase sliding clamp
Swissprot	tr\|Q00265\|PCNA2_DAUCA	2E-161	Proliferating cell nuclear antigen large form
trEMBL	tr\|W9R1P0\|W9R1P0_9ROSA	4E-152	Proliferating cell nuclear antigen {ECO:0000256\|RuleBase:RU000641}
TAIR10	AT1G07370.1	7E-113	proliferating cellular nuclear antigen 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	94948686	94950565	-
GWHAAZE00000001	mRNA	94948686	94950565	-
GWHAAZE00000001	exon	94948686	94949192	-
GWHAAZE00000001	exon	94949318	94949415	-
GWHAAZE00000001	exon	94949500	94949718	-
GWHAAZE00000001	exon	94950319	94950565	-
GWHAAZE00000001	CDS	94950319	94950565	-
GWHAAZE00000001	CDS	94949500	94949718	-
GWHAAZE00000001	CDS	94949318	94949415	-
GWHAAZE00000001	CDS	94948686	94949192	-

Transcript Sequence
>GWHTAAZE003267 ATGTTGGAGCTAAGGTTGGTGCAGGGGAGTCTGTTGAAGAAAGTAATGGAGTCGATCAAAGATCTGGTGACCGACGCTAACTTCGACTGCTCAGCCTCTGGTTTCTCTCTCCAAGCCATGGATTCGAGCCATGTTGCCCTGGTGGCTCTCCTCCTCAGATCTGAGGGCTTTGACCACTACCGCTGCGATCGCAACCTCTCCATGGGGATGAACCTCACCAACATGGCCAAGATGCTAAAGTGCGCTGCTCAAGACAAGATTGCGGATTTTGAGATGAAGCTCATGGACATTGATAGTGAGCATCTCGGGATTCCGGAATCAGAATACGAGGCCATTGTTAGGATGCCATCAGCTGAGTTTGCTAGGATCTGCAAAGATCTCAGCACCATCGGTGACACTGGTACTTCGTGTCTTCCTTATGCTCATCTTACCATACTTCTAGTTCTGCTCTACGACTTCCTTTACGTTGTGATATCTGTAACAAAGGAAGGTGTCAAGTTCTCCACTAGAGGTGATATTGGAACAGCAAATATAGTTTGCAGGCAAAATACTTCAGTTGACAAGCCAGAAGAAGCTACTATAATAGAAATGAAGGAGCCAGTTTCATTGACCTTTGCACTGAGATATATGAACTCCTTCACAAAGGCAACCCCACTGGCAAACCAAGTGACCATAAGCTTGTCTGCTGATCTACCAGTGGTGGTCGAGTACAGAATTGCAGAGATGGGCTATGTTAGGTTCTATTTGGCTCCCAAGATTGAAGAAGAGGAAGATATGGGGGCTCGCCCAGCTGAGCCAGTGGAGCCCACCAAGTCCAAAGTGGAGGCTAATAAGCCTCCTAATCCTCTAGCCGAAATAAATTTAGAAGTGGAGGCTAAAGCTGAAACCAATTCAGAAGCGGAGATTAAGCCTAAACTGGAGACCGAATCTGAAATGGAAGTAGTAGAGGTTACCATAAAGAGTCAACCTGATGAGGAATGCGAGGCTCCGGTTGAGAACAAACCTAAGGTTGAAATCAAGCCTGATACAGAAGAAACCAATGGTGAAGTTGAAGTTATGGATGTTGAATAA

Network for GWHGAAZE003261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00705.19	PCNA_N	1	86	4.40E-41
PF02747.16	PCNA_C	103	133	7.50E-10
PF02747.16	PCNA_C	156	252	8.70E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04802	PCNA	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430
		Cell cycle	map04110
		Tight junction	map04530

Gene Ontology

GO term	Ontology	Name
GO:0006275	biological_process	regulation of DNA replication
GO:0003677	molecular_function	DNA binding
GO:0030337	molecular_function	DNA polymerase processivity factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.592
	SRR3591706	second leaf	5.006
	SRR3591707	mature leaf	1.202
	SRR3591708	Shoot apex	40.589
	SRR3591709	Stem	3.144
	SRR3591710	White floral bud	0.628
	SRR3591711	White flower	0.625
	SRR3591712	Green floral bud	2.126
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.725
	SRR8316896	Juvenile bud stage	1.745
	SRR8316897	Juvenile bud stage	1.233
	SRR8316894	Third green stage	0.721
	SRR8316900	Third green stage	0.713
	SRR8316901	Third green stage	0.829
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.770
	SRR8316903	Complete white stage	0.263
	SRR8316902	Silver flowering stage	0.034
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.073
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.119
	SRR6706287	Light intensity 50%	1.396
	SRR6706288	Light intensity 20%	1.609
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.544
	CNS0095593	Slightly white alabastrum(diploid) 2	2.556
	CNS0095594	Slightly white alabastrum(diploid) 3	2.061
	CNS0095595	Whole white alabastrum(diploid) 2	1.241
	CNS0095596	Whole white alabastrum(diploid) 3	1.277
	CNS0095597	Whole white alabastrum(diploid) 4	0.650
	CNS0095598	Silvery flower (diploied) 1	1.679
	CNS0095599	Silvery flower (diploied) 2	4.385
	CNS0095600	Silvery flower (diploied) 3	0.870
	CNS0095601	Golden flower (diploid) 1	1.520
	CNS0095602	Golden flower (diploid) 2	0.869
	CNS0095603	Golden flower (diploid) 3	0.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.181
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.540
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.545
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.845
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.456
	CNS0095612	Silvery flower (tetraploid) 3	0.704
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.007
CRA001975	CRR073297	Stem 1	7.708
	CRR073298	Stem 2	4.358
	CRR073299	Stem 3	8.685
	CRR073300	Leaf 1	0.967
	CRR073301	Leaf 2	0.965
	CRR073302	Leaf 3	0.566
	CRR073303	Juvenile bud 1	1.187
	CRR073304	Juvenile bud 2	0.283
	CRR073305	Juvenile bud 3	1.101
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.432
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.044
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.519
	CRR073316	Gold flowering 2	0.450
	CRR073317	Gold flowering 3	0.873
	CRR073318	Tawny withering 1	5.526
	CRR073319	Tawny withering 2	2.958
	CRR073320	Tawny withering 3	6.306