Gene detail

Detail information of GWHGAAZE003258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007218719.1	4.1469E-175	hypothetical protein PRUPE_ppa009021mg [Prunus persica]
Swissprot	tr\|P59277\|SYP81_ARATH	2E-139	Syntaxin-81
trEMBL	tr\|M5XEH6\|M5XEH6_PRUPE	2E-175	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19918.1}
TAIR10	AT1G51740.1	6E-107	syntaxin of plants 81

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	94924083	94926992	+
GWHAAZE00000001	mRNA	94924083	94926992	+
GWHAAZE00000001	exon	94924083	94924147	+
GWHAAZE00000001	exon	94924250	94924329	+
GWHAAZE00000001	exon	94924906	94924989	+
GWHAAZE00000001	exon	94925085	94925189	+
GWHAAZE00000001	exon	94925418	94925561	+
GWHAAZE00000001	exon	94926062	94926328	+
GWHAAZE00000001	exon	94926452	94926583	+
GWHAAZE00000001	exon	94926849	94926992	+
GWHAAZE00000001	five_prime_UTR	94924083	94924147	+
GWHAAZE00000001	five_prime_UTR	94924250	94924251	+
GWHAAZE00000001	CDS	94924252	94924329	+
GWHAAZE00000001	CDS	94924906	94924989	+
GWHAAZE00000001	CDS	94925085	94925189	+
GWHAAZE00000001	CDS	94925418	94925561	+
GWHAAZE00000001	CDS	94926062	94926328	+
GWHAAZE00000001	CDS	94926452	94926583	+
GWHAAZE00000001	CDS	94926849	94926992	+

Transcript Sequence
>GWHTAAZE003264 GACTGACGTGCTATGATAGTTTTTGGAAATTATTTCAATTAGGCCAATAGTTGCTCATATAAGAGGAATGGCTAAAGCTAGGGATAGAACTGAAGACTTCAAAGATGCTGTTCACCGGGCAGCTTTGTCTTTGGGTTATACTGAGTCCAAAATGGCAGCCATATTGGCATCTTTCATTATGCAGAAACCTCGACAAAGGTCATCTTTCACCAAAGCTGCACTCAAGACGCTAGAGAGCATTGGAGCACTGGAGCAGTTCTTAATGAAGCATAGGAAGGATTATGTAGATCCACACCGTACCACCGAACAGGAGAGAGATAGCATCGAGCATGAAGTTACAGTTTTTATCAAAGCATGCAAAGAACAGATAGATATTCTCAAAGCAAGTATAAATGATGGCGAAGTAACGGGTAAGGGCTGGCTTGGTATTAGGGGGGATAATGCTAATGCCGATACAATTGCACACAAACATGGAGTGGTTTTGATTTTAAGCGAAGGGCTTCATGCGGTCACATCACAGTTTGATCAGCTGCGAGCAATACGCTTCCAAGATGCCATAAACCGAGCTATACCAAGAAGAAAAGCTAAGCAGAATGGCAGAAGAAATTCTACTGATATCTCTAAGTCTAATAATTTAGAGCACATAGAGCCTAACACTTCTGAAGTGAGGGAGTATGCTGAAATTCAATGCGAGCCTAATACAGTCCAGCAACAACTTTTGGATGACGAGACACGTGCTCTTCAGGCGGAGTTGACAAGTCTTCTAGATGCTGTTCAAGAAACGGAAACAAAGATGGTTGAAATGTCTGCATTGAATCATCTCATGTCTACACACGTGTTGCAACAGGCTCAACAGATAGAGCTTCTGTATGAGCAGGCAGTTGAAGCTACAACAAACGTAGAGCTCGGCAACAAAGAACTGTCTCAAGCCATCCAACGAAATAGCAGTAGCAGAACTTTCCTTTTGCTTTTCTTATTTGTACTTACTTTTTCAGTCCTTTTTCTTGATTGGTACAGTTAA

Network for GWHGAAZE003258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10496.10	Syntaxin-18_N	5	86	3.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08492	STX18	SNARE interactions in vesicular transport	map04130
K08492	STX18	Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.752
	SRR3591706	second leaf	14.874
	SRR3591707	mature leaf	10.522
	SRR3591708	Shoot apex	29.564
	SRR3591709	Stem	23.757
	SRR3591710	White floral bud	16.183
	SRR3591711	White flower	12.047
	SRR3591712	Green floral bud	12.969
	SRR3591713	Yellow flower	6.393
SRP173429	SRR8316895	Juvenile bud stage	18.936
	SRR8316896	Juvenile bud stage	30.000
	SRR8316897	Juvenile bud stage	9.616
	SRR8316894	Third green stage	10.353
	SRR8316900	Third green stage	18.068
	SRR8316901	Third green stage	23.490
	SRR8316898	Complete white stage	8.820
	SRR8316899	Complete white stage	25.894
	SRR8316903	Complete white stage	17.252
	SRR8316902	Silver flowering stage	10.860
	SRR8316904	Silver flowering stage	12.916
	SRR8316905	Silver flowering stage	5.755
	SRR8316906	Gold flowering stage	16.331
	SRR8316907	Gold flowering stage	18.456
	SRR8316908	Gold flowering stage	13.246
SRP132670	SRR6706286	Control	16.533
	SRR6706287	Light intensity 50%	20.530
	SRR6706288	Light intensity 20%	20.607
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.567
	CNS0095593	Slightly white alabastrum(diploid) 2	33.593
	CNS0095594	Slightly white alabastrum(diploid) 3	23.880
	CNS0095595	Whole white alabastrum(diploid) 2	26.044
	CNS0095596	Whole white alabastrum(diploid) 3	24.058
	CNS0095597	Whole white alabastrum(diploid) 4	22.193
	CNS0095598	Silvery flower (diploied) 1	33.541
	CNS0095599	Silvery flower (diploied) 2	25.682
	CNS0095600	Silvery flower (diploied) 3	14.312
	CNS0095601	Golden flower (diploid) 1	26.078
	CNS0095602	Golden flower (diploid) 2	14.011
	CNS0095603	Golden flower (diploid) 3	12.405
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.084
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.977
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.878
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.347
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.464
	CNS0095610	Silvery flower (tetraploid) 1	16.671
	CNS0095611	Silvery flower (tetraploid) 2	14.123
	CNS0095612	Silvery flower (tetraploid) 3	16.420
	CNS0095613	Golden flower (tetraploid) 1	11.499
	CNS0095614	Golden flower (tetraploid) 2	14.370
	CNS0095615	Golden flower (tetraploid) 3	3.749
CRA001975	CRR073297	Stem 1	25.282
	CRR073298	Stem 2	20.233
	CRR073299	Stem 3	9.873
	CRR073300	Leaf 1	18.730
	CRR073301	Leaf 2	19.086
	CRR073302	Leaf 3	11.191
	CRR073303	Juvenile bud 1	10.613
	CRR073304	Juvenile bud 2	5.318
	CRR073305	Juvenile bud 3	6.064
	CRR073306	Third green 1	1.941
	CRR073307	Third green 2	4.823
	CRR073308	Third green 3	2.694
	CRR073309	Second white 1	2.668
	CRR073310	Second white 2	5.796
	CRR073311	Second white 3	3.002
	CRR073312	Silver flowering 1	1.219
	CRR073313	Silver flowering 2	0.449
	CRR073314	Silver flowering 3	1.364
	CRR073315	Gold flowering 1	3.049
	CRR073316	Gold flowering 2	6.225
	CRR073317	Gold flowering 3	2.375
	CRR073318	Tawny withering 1	10.256
	CRR073319	Tawny withering 2	16.123
	CRR073320	Tawny withering 3	13.055