Detail information of GWHGAAZE003241


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU19954.19.46375E-66hypothetical protein MIMGU_mgv1a013564mg [Erythranthe guttata]
Swissprottr|Q39434|RB2BV_BETVU1E-63Ras-related protein Rab2BV
trEMBLtr|A0A022PWU0|A0A022PWU0_ERYGU4E-66Uncharacterized protein {ECO:0000313|EMBL:EYU19954.1}
TAIR10AT1G07410.19E-50RAB GTPase homolog A2B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9459319494594505-
GWHAAZE00000001mRNA9459319494594505-
GWHAAZE00000001exon9459319494593417-
GWHAAZE00000001exon9459409494594505-
GWHAAZE00000001CDS9459409494594505-
GWHAAZE00000001CDS9459319494593417-
Transcript Sequence

Network for GWHGAAZE003241

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras141084.10E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.525
SRR3591706second leaf0.117
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.078
SRR3591709Stem0.237
SRR3591710White floral bud3.454
SRR3591711White flower0.085
SRR3591712Green floral bud7.253
SRR3591713Yellow flower0.151
SRP173429 SRR8316895Juvenile bud stage 1.249
SRR8316896Juvenile bud stage 3.873
SRR8316897Juvenile bud stage 2.026
SRR8316894Third green stage 1.590
SRR8316900Third green stage 6.419
SRR8316901Third green stage 8.907
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.192
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.072
SRR8316905Silver flowering stage0.017
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.183
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control2.233
SRR6706287Light intensity 50%2.257
SRR6706288Light intensity 20%2.030
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.207
CNS0095593Slightly white alabastrum(diploid) 24.429
CNS0095594Slightly white alabastrum(diploid) 37.600
CNS0095595Whole white alabastrum(diploid) 28.669
CNS0095596Whole white alabastrum(diploid) 312.070
CNS0095597Whole white alabastrum(diploid) 414.368
CNS0095598Silvery flower (diploied) 10.844
CNS0095599Silvery flower (diploied) 20.509
CNS0095600Silvery flower (diploied) 30.219
CNS0095601Golden flower (diploid) 10.011
CNS0095602Golden flower (diploid) 20.393
CNS0095603Golden flower (diploid) 30.217
CNS0095604Slightly white alabastrum(tetraploid) 19.827
CNS0095605Slightly white alabastrum(tetraploid) 213.229
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 118.230
CNS0095608Whole white alabastrum(tetraploid) 215.420
CNS0095609Whole white alabastrum(tetraploid) 39.950
CNS0095610Silvery flower (tetraploid) 10.020
CNS0095611Silvery flower (tetraploid) 20.475
CNS0095612Silvery flower (tetraploid) 30.685
CNS0095613Golden flower (tetraploid) 10.167
CNS0095614Golden flower (tetraploid) 20.079
CNS0095615Golden flower (tetraploid) 30.451
CRA001975CRR073297Stem 13.087
CRR073298Stem 21.879
CRR073299Stem 31.690
CRR073300Leaf 13.916
CRR073301Leaf 24.843
CRR073302Leaf 33.194
CRR073303Juvenile bud 12.408
CRR073304Juvenile bud 22.818
CRR073305Juvenile bud 30.273
CRR073306Third green 10.876
CRR073307Third green 21.151
CRR073308Third green 30.415
CRR073309Second white 10.268
CRR073310Second white 20.230
CRR073311Second white 30.145
CRR073312Silver flowering 10.466
CRR073313Silver flowering 20.880
CRR073314Silver flowering 30.510
CRR073315Gold flowering 11.979
CRR073316Gold flowering 20.491
CRR073317Gold flowering 30.842
CRR073318Tawny withering 10.295
CRR073319Tawny withering 21.369
CRR073320Tawny withering 31.098