Gene detail

Detail information of GWHGAAZE003225

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010256814.1	3.3035E-139	PREDICTED: tropinone reductase homolog At1g07440-like isoform X1 [Nelumbo nucifera]
COG	YP_003390554.1	1E-75	short-chain dehydrogenase/reductase SDR
Swissprot	tr\|Q9ASX2\|TRNH1_ARATH	2E-106	Tropinone reductase homolog At1g07440
trEMBL	tr\|A0A022PYL2\|A0A022PYL2_ERYGU	1E-135	Uncharacterized protein {ECO:0000313\|EMBL:EYU19938.1}
TAIR10	AT5G06060.1	3E-94	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	94255581	94257606	+
GWHAAZE00000001	mRNA	94255581	94257606	+
GWHAAZE00000001	exon	94255581	94255787	+
GWHAAZE00000001	exon	94256886	94257102	+
GWHAAZE00000001	exon	94257209	94257315	+
GWHAAZE00000001	exon	94257430	94257606	+
GWHAAZE00000001	CDS	94255581	94255787	+
GWHAAZE00000001	CDS	94256886	94257102	+
GWHAAZE00000001	CDS	94257209	94257315	+
GWHAAZE00000001	CDS	94257430	94257606	+

Transcript Sequence
>GWHTAAZE003231 CATGCTGTTGTGGAGGAATTAGCTGGACTTGGAGCCGCAGTGCACACCTGCTCACGCAACGAGATGGAGCTCAACCAGCGTTTGCAAGAATGGACGACCAAGGGCTATTCCGTCACCGGCTCGGTTTGTGATTTGTTGTCTAGACCCCAAAGACAGCAGCTCTTGGAAAAAGCCTCCTCTCTTTTCAATGGCAAGCTCAACATCCTCATAAACAATGTAGGAACAAACATCCGGAAGGCAACTACTGACTATACTACTGAAGAGTACTCAATGCTAATGGCTACAAACTTGGAATCTGCGTACCATCTGTGTCAACTAGCACATCCTCTTCTAAAGGCATCTGGAGTTGGAAGTGTAGTGTTCATTTCTTCTGTTGGAGGTCTAGTGCACATATTTTCTGGATCCATTTATGGAGCGAGTAAAGGTGCAATGAATCAGCTAACAAAGAACTTGGCATGCGAGTGGGCAAAAGATAACATCCGTACAAATTGTGTTGCACCCTGGTACATCAGAACATCACTTGTAGAACATTTATTGGATGACAAAGAGTTCTTAGAAAGAGTGGTGGCAAGAACTCCAATGAGGCGTCCAGGAGAACCGAAGGAAGTGTCATCCCTGGTGGCTTTTCTGTGCTTACCTGCTTCTTCTTACATCACTGGACAGGTTATTGCTGTCGACGGTGGTATGACCGTTAATGGTTTTGCCTAA

Network for GWHGAAZE003225

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	2	230	4.90E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08081	TR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.843
	SRR3591706	second leaf	26.994
	SRR3591707	mature leaf	9.501
	SRR3591708	Shoot apex	73.205
	SRR3591709	Stem	39.252
	SRR3591710	White floral bud	65.812
	SRR3591711	White flower	59.032
	SRR3591712	Green floral bud	59.165
	SRR3591713	Yellow flower	62.633
SRP173429	SRR8316895	Juvenile bud stage	33.911
	SRR8316896	Juvenile bud stage	50.029
	SRR8316897	Juvenile bud stage	24.892
	SRR8316894	Third green stage	19.756
	SRR8316900	Third green stage	74.413
	SRR8316901	Third green stage	66.921
	SRR8316898	Complete white stage	29.346
	SRR8316899	Complete white stage	61.031
	SRR8316903	Complete white stage	38.338
	SRR8316902	Silver flowering stage	16.380
	SRR8316904	Silver flowering stage	16.323
	SRR8316905	Silver flowering stage	11.515
	SRR8316906	Gold flowering stage	28.327
	SRR8316907	Gold flowering stage	23.280
	SRR8316908	Gold flowering stage	33.975
SRP132670	SRR6706286	Control	51.737
	SRR6706287	Light intensity 50%	57.049
	SRR6706288	Light intensity 20%	56.434
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.634
	CNS0095593	Slightly white alabastrum(diploid) 2	61.661
	CNS0095594	Slightly white alabastrum(diploid) 3	58.741
	CNS0095595	Whole white alabastrum(diploid) 2	56.883
	CNS0095596	Whole white alabastrum(diploid) 3	64.028
	CNS0095597	Whole white alabastrum(diploid) 4	50.073
	CNS0095598	Silvery flower (diploied) 1	30.304
	CNS0095599	Silvery flower (diploied) 2	29.752
	CNS0095600	Silvery flower (diploied) 3	30.274
	CNS0095601	Golden flower (diploid) 1	35.440
	CNS0095602	Golden flower (diploid) 2	25.437
	CNS0095603	Golden flower (diploid) 3	28.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.570
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.461
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.959
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.941
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.649
	CNS0095610	Silvery flower (tetraploid) 1	27.010
	CNS0095611	Silvery flower (tetraploid) 2	25.346
	CNS0095612	Silvery flower (tetraploid) 3	22.378
	CNS0095613	Golden flower (tetraploid) 1	17.206
	CNS0095614	Golden flower (tetraploid) 2	23.762
	CNS0095615	Golden flower (tetraploid) 3	11.682
CRA001975	CRR073297	Stem 1	42.485
	CRR073298	Stem 2	44.351
	CRR073299	Stem 3	32.894
	CRR073300	Leaf 1	40.085
	CRR073301	Leaf 2	42.814
	CRR073302	Leaf 3	45.870
	CRR073303	Juvenile bud 1	49.774
	CRR073304	Juvenile bud 2	55.326
	CRR073305	Juvenile bud 3	47.171
	CRR073306	Third green 1	25.078
	CRR073307	Third green 2	24.886
	CRR073308	Third green 3	17.247
	CRR073309	Second white 1	5.926
	CRR073310	Second white 2	2.953
	CRR073311	Second white 3	5.108
	CRR073312	Silver flowering 1	6.488
	CRR073313	Silver flowering 2	7.003
	CRR073314	Silver flowering 3	4.384
	CRR073315	Gold flowering 1	6.577
	CRR073316	Gold flowering 2	7.587
	CRR073317	Gold flowering 3	6.735
	CRR073318	Tawny withering 1	13.308
	CRR073319	Tawny withering 2	7.711
	CRR073320	Tawny withering 3	6.665