Detail information of GWHGAAZE003185


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00069.10unnamed protein product [Coffea canephora]
COGYP_007108422.16E-164NAD-dependent epimerase/dehydratase
Swissprottr|Q9ZV36|UXS6_ARATH0UDP-glucuronic acid decarboxylase 6
trEMBLtr|A0A068TVT8|A0A068TVT8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDP00069.1}
TAIR10AT2G28760.39E-179UDP-XYL synthase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9349597293499418-
GWHAAZE00000001mRNA9349597293499418-
GWHAAZE00000001exon9349932993499418-
GWHAAZE00000001exon9349841893498504-
GWHAAZE00000001exon9349820393498290-
GWHAAZE00000001exon9349801293498103-
GWHAAZE00000001exon9349766993497733-
GWHAAZE00000001exon9349750093497588-
GWHAAZE00000001exon9349694093497017-
GWHAAZE00000001exon9349668893496781-
GWHAAZE00000001exon9349652693496592-
GWHAAZE00000001exon9349631493496418-
GWHAAZE00000001exon9349597293496191-
GWHAAZE00000001CDS9349932993499418-
GWHAAZE00000001CDS9349841893498504-
GWHAAZE00000001CDS9349820393498290-
GWHAAZE00000001CDS9349801293498103-
GWHAAZE00000001CDS9349766993497733-
GWHAAZE00000001CDS9349750093497588-
GWHAAZE00000001CDS9349694093497017-
GWHAAZE00000001CDS9349668893496781-
GWHAAZE00000001CDS9349652693496592-
GWHAAZE00000001CDS9349631493496418-
GWHAAZE00000001CDS9349600693496191-
GWHAAZE00000001three_prime_UTR9349597293496005-
Transcript Sequence

Network for GWHGAAZE003185

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.6GDP_Man_Dehyd363301.70E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08678UXS1, uxs Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf800.525
SRR3591706second leaf86.893
SRR3591707mature leaf42.043
SRR3591708Shoot apex226.780
SRR3591709Stem579.087
SRR3591710White floral bud277.932
SRR3591711White flower413.351
SRR3591712Green floral bud171.153
SRR3591713Yellow flower1009.710
SRP173429 SRR8316895Juvenile bud stage 372.168
SRR8316896Juvenile bud stage 279.429
SRR8316897Juvenile bud stage 120.182
SRR8316894Third green stage 83.763
SRR8316900Third green stage 257.127
SRR8316901Third green stage 267.951
SRR8316898Complete white stage 220.364
SRR8316899Complete white stage 330.012
SRR8316903Complete white stage 295.777
SRR8316902Silver flowering stage305.951
SRR8316904Silver flowering stage360.484
SRR8316905Silver flowering stage136.542
SRR8316906Gold flowering stage 562.267
SRR8316907Gold flowering stage 597.638
SRR8316908Gold flowering stage 477.964
SRP132670SRR6706286Control152.184
SRR6706287Light intensity 50%145.150
SRR6706288Light intensity 20%146.233
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1238.926
CNS0095593Slightly white alabastrum(diploid) 2191.273
CNS0095594Slightly white alabastrum(diploid) 3276.348
CNS0095595Whole white alabastrum(diploid) 2139.003
CNS0095596Whole white alabastrum(diploid) 3170.049
CNS0095597Whole white alabastrum(diploid) 4137.973
CNS0095598Silvery flower (diploied) 1235.904
CNS0095599Silvery flower (diploied) 2229.544
CNS0095600Silvery flower (diploied) 3683.599
CNS0095601Golden flower (diploid) 1411.224
CNS0095602Golden flower (diploid) 2904.953
CNS0095603Golden flower (diploid) 3879.651
CNS0095604Slightly white alabastrum(tetraploid) 1139.771
CNS0095605Slightly white alabastrum(tetraploid) 2131.727
CNS0095606Slightly white alabastrum(tetraploid) 3285.909
CNS0095607Whole white alabastrum(tetraploid) 193.029
CNS0095608Whole white alabastrum(tetraploid) 276.760
CNS0095609Whole white alabastrum(tetraploid) 3182.537
CNS0095610Silvery flower (tetraploid) 1772.202
CNS0095611Silvery flower (tetraploid) 2744.417
CNS0095612Silvery flower (tetraploid) 3466.631
CNS0095613Golden flower (tetraploid) 11497.502
CNS0095614Golden flower (tetraploid) 21213.785
CNS0095615Golden flower (tetraploid) 32885.198
CRA001975CRR073297Stem 1789.245
CRR073298Stem 2474.052
CRR073299Stem 3653.491
CRR073300Leaf 1250.815
CRR073301Leaf 2226.855
CRR073302Leaf 3351.136
CRR073303Juvenile bud 1324.440
CRR073304Juvenile bud 2360.200
CRR073305Juvenile bud 3410.263
CRR073306Third green 1393.483
CRR073307Third green 2430.022
CRR073308Third green 3384.885
CRR073309Second white 1816.074
CRR073310Second white 2400.281
CRR073311Second white 3432.740
CRR073312Silver flowering 1691.061
CRR073313Silver flowering 2797.477
CRR073314Silver flowering 3605.302
CRR073315Gold flowering 1143.334
CRR073316Gold flowering 2198.284
CRR073317Gold flowering 3138.249
CRR073318Tawny withering 1543.725
CRR073319Tawny withering 2383.366
CRR073320Tawny withering 3858.533