Detail information of GWHGAAZE003183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008233665.17.05106E-54PREDICTED: THO complex subunit 4A-like [Prunus mume]
Swissprottr|Q8L719|THO4B_ARATH3E-37THO complex subunit 4B
trEMBLtr|W1PI99|W1PI99_AMBTC3E-48Uncharacterized protein {ECO:0000313|EMBL:ERN07718.1}
TAIR10AT5G02530.13E-32RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9344507993448431+
GWHAAZE00000001mRNA9344507993448431+
GWHAAZE00000001exon9344507993445192+
GWHAAZE00000001exon9344558293445662+
GWHAAZE00000001exon9344675593446823+
GWHAAZE00000001exon9344690693447090+
GWHAAZE00000001exon9344807193448431+
GWHAAZE00000001CDS9344507993445192+
GWHAAZE00000001CDS9344558293445662+
GWHAAZE00000001CDS9344675593446823+
GWHAAZE00000001CDS9344690693447090+
GWHAAZE00000001CDS9344807193448245+
GWHAAZE00000001three_prime_UTR9344824693448431+
Transcript Sequence

Network for GWHGAAZE003183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_1671182.60E-08
PF13865.7FoP_duplication1462014.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12881THOC4, ALY Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.980
SRR3591706second leaf5.006
SRR3591707mature leaf5.733
SRR3591708Shoot apex14.921
SRR3591709Stem10.691
SRR3591710White floral bud17.477
SRR3591711White flower26.457
SRR3591712Green floral bud21.895
SRR3591713Yellow flower15.642
SRP173429 SRR8316895Juvenile bud stage 13.817
SRR8316896Juvenile bud stage 17.653
SRR8316897Juvenile bud stage 9.637
SRR8316894Third green stage 7.577
SRR8316900Third green stage 24.577
SRR8316901Third green stage 24.713
SRR8316898Complete white stage 10.130
SRR8316899Complete white stage 25.140
SRR8316903Complete white stage 11.934
SRR8316902Silver flowering stage12.809
SRR8316904Silver flowering stage12.361
SRR8316905Silver flowering stage6.302
SRR8316906Gold flowering stage 22.195
SRR8316907Gold flowering stage 21.506
SRR8316908Gold flowering stage 24.410
SRP132670SRR6706286Control16.742
SRR6706287Light intensity 50%16.419
SRR6706288Light intensity 20%18.173
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.063
CNS0095593Slightly white alabastrum(diploid) 238.583
CNS0095594Slightly white alabastrum(diploid) 334.683
CNS0095595Whole white alabastrum(diploid) 235.261
CNS0095596Whole white alabastrum(diploid) 334.460
CNS0095597Whole white alabastrum(diploid) 431.903
CNS0095598Silvery flower (diploied) 122.540
CNS0095599Silvery flower (diploied) 217.395
CNS0095600Silvery flower (diploied) 321.388
CNS0095601Golden flower (diploid) 119.027
CNS0095602Golden flower (diploid) 213.111
CNS0095603Golden flower (diploid) 312.494
CNS0095604Slightly white alabastrum(tetraploid) 135.077
CNS0095605Slightly white alabastrum(tetraploid) 235.502
CNS0095606Slightly white alabastrum(tetraploid) 331.862
CNS0095607Whole white alabastrum(tetraploid) 136.186
CNS0095608Whole white alabastrum(tetraploid) 232.485
CNS0095609Whole white alabastrum(tetraploid) 337.724
CNS0095610Silvery flower (tetraploid) 131.404
CNS0095611Silvery flower (tetraploid) 223.620
CNS0095612Silvery flower (tetraploid) 328.924
CNS0095613Golden flower (tetraploid) 128.109
CNS0095614Golden flower (tetraploid) 224.351
CNS0095615Golden flower (tetraploid) 316.425
CRA001975CRR073297Stem 111.424
CRR073298Stem 211.399
CRR073299Stem 312.781
CRR073300Leaf 110.409
CRR073301Leaf 212.042
CRR073302Leaf 312.914
CRR073303Juvenile bud 19.860
CRR073304Juvenile bud 29.152
CRR073305Juvenile bud 39.400
CRR073306Third green 18.772
CRR073307Third green 27.483
CRR073308Third green 311.662
CRR073309Second white 118.444
CRR073310Second white 215.657
CRR073311Second white 39.619
CRR073312Silver flowering 18.266
CRR073313Silver flowering 28.334
CRR073314Silver flowering 37.839
CRR073315Gold flowering 111.461
CRR073316Gold flowering 27.539
CRR073317Gold flowering 37.380
CRR073318Tawny withering 113.320
CRR073319Tawny withering 28.817
CRR073320Tawny withering 312.295