Detail information of GWHGAAZE003180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAEA92307.11.4045E-127Rab3 [Hevea brasiliensis]
COGYP_008431664.14E-29hypothetical protein N186_01315
Swissprottr|P28186|RAE1C_ARATH3E-127Ras-related protein RABE1c
trEMBLtr|F2VXU5|F2VXU5_HEVBR5E-128Rab3 {ECO:0000313|EMBL:AEA92307.1}
TAIR10AT5G59840.13E-83Ras-related small GTP-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9337820893380969-
GWHAAZE00000001mRNA9337820893380969-
GWHAAZE00000001exon9337820893378288-
GWHAAZE00000001exon9337897793379069-
GWHAAZE00000001exon9337915693379218-
GWHAAZE00000001exon9337955393379650-
GWHAAZE00000001exon9337976293379827-
GWHAAZE00000001exon9338027493380374-
GWHAAZE00000001exon9338076293380834-
GWHAAZE00000001exon9338092493380969-
GWHAAZE00000001CDS9338092493380969-
GWHAAZE00000001CDS9338076293380834-
GWHAAZE00000001CDS9338027493380374-
GWHAAZE00000001CDS9337976293379827-
GWHAAZE00000001CDS9337955393379650-
GWHAAZE00000001CDS9337915693379218-
GWHAAZE00000001CDS9337897793379069-
GWHAAZE00000001CDS9337820893378288-
Transcript Sequence

Network for GWHGAAZE003180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras141692.10E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07901RAB8A, MEL AMPK signaling pathway map04152
Endocytosismap04144
Autophagy - animalmap04140
Tight junctionmap04530
Pancreatic secretionmap04972

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf104.005
SRR3591706second leaf38.736
SRR3591707mature leaf40.927
SRR3591708Shoot apex52.139
SRR3591709Stem73.780
SRR3591710White floral bud86.650
SRR3591711White flower66.737
SRR3591712Green floral bud80.662
SRR3591713Yellow flower70.467
SRP173429 SRR8316895Juvenile bud stage 128.238
SRR8316896Juvenile bud stage 176.328
SRR8316897Juvenile bud stage 119.616
SRR8316894Third green stage 25.159
SRR8316900Third green stage 72.344
SRR8316901Third green stage 105.915
SRR8316898Complete white stage 29.822
SRR8316899Complete white stage 110.587
SRR8316903Complete white stage 37.868
SRR8316902Silver flowering stage31.940
SRR8316904Silver flowering stage36.140
SRR8316905Silver flowering stage17.666
SRR8316906Gold flowering stage 52.820
SRR8316907Gold flowering stage 65.231
SRR8316908Gold flowering stage 52.740
SRP132670SRR6706286Control71.103
SRR6706287Light intensity 50%75.926
SRR6706288Light intensity 20%73.710
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1101.316
CNS0095593Slightly white alabastrum(diploid) 2155.301
CNS0095594Slightly white alabastrum(diploid) 3130.800
CNS0095595Whole white alabastrum(diploid) 2132.285
CNS0095596Whole white alabastrum(diploid) 374.088
CNS0095597Whole white alabastrum(diploid) 4115.886
CNS0095598Silvery flower (diploied) 1135.859
CNS0095599Silvery flower (diploied) 2173.541
CNS0095600Silvery flower (diploied) 399.535
CNS0095601Golden flower (diploid) 1168.366
CNS0095602Golden flower (diploid) 2136.548
CNS0095603Golden flower (diploid) 3126.549
CNS0095604Slightly white alabastrum(tetraploid) 173.702
CNS0095605Slightly white alabastrum(tetraploid) 272.508
CNS0095606Slightly white alabastrum(tetraploid) 373.419
CNS0095607Whole white alabastrum(tetraploid) 194.072
CNS0095608Whole white alabastrum(tetraploid) 299.470
CNS0095609Whole white alabastrum(tetraploid) 378.764
CNS0095610Silvery flower (tetraploid) 169.232
CNS0095611Silvery flower (tetraploid) 265.846
CNS0095612Silvery flower (tetraploid) 377.041
CNS0095613Golden flower (tetraploid) 167.448
CNS0095614Golden flower (tetraploid) 264.605
CNS0095615Golden flower (tetraploid) 374.899
CRA001975CRR073297Stem 1137.667
CRR073298Stem 2119.626
CRR073299Stem 380.964
CRR073300Leaf 1145.651
CRR073301Leaf 2190.691
CRR073302Leaf 397.968
CRR073303Juvenile bud 1130.498
CRR073304Juvenile bud 281.557
CRR073305Juvenile bud 3130.732
CRR073306Third green 179.699
CRR073307Third green 270.330
CRR073308Third green 370.756
CRR073309Second white 1188.853
CRR073310Second white 2127.738
CRR073311Second white 3136.977
CRR073312Silver flowering 1212.929
CRR073313Silver flowering 2239.495
CRR073314Silver flowering 3195.014
CRR073315Gold flowering 185.861
CRR073316Gold flowering 296.689
CRR073317Gold flowering 364.370
CRR073318Tawny withering 1109.788
CRR073319Tawny withering 2117.667
CRR073320Tawny withering 376.290