Detail information of GWHGAAZE003150


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP04317.11.8206E-129unnamed protein product [Coffea canephora]
COGYP_007142062.11E-16glutathione S-transferase
Swissprottr|Q8H8U5|IN21B_ORYSJ3E-110Protein IN2-1 homolog B
trEMBLtr|A0A068U7Q6|A0A068U7Q6_COFCA7E-130Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313|EMBL:CDP04317.1}
TAIR10AT3G55040.12E-89glutathione transferase lambda 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9286113092878381-
GWHAAZE00000001mRNA9286113092878381-
GWHAAZE00000001exon9287827592878381-
GWHAAZE00000001exon9287804592878105-
GWHAAZE00000001exon9287783592877921-
GWHAAZE00000001exon9287742092877518-
GWHAAZE00000001exon9287724292877344-
GWHAAZE00000001exon9287706792877143-
GWHAAZE00000001exon9287683692876943-
GWHAAZE00000001exon9287639292876518-
GWHAAZE00000001exon9286903292869185-
GWHAAZE00000001exon9286113092861262-
GWHAAZE00000001CDS9287827592878381-
GWHAAZE00000001CDS9287804592878105-
GWHAAZE00000001CDS9287783592877921-
GWHAAZE00000001CDS9287742092877518-
GWHAAZE00000001CDS9287724292877344-
GWHAAZE00000001CDS9287706792877143-
GWHAAZE00000001CDS9287683692876943-
GWHAAZE00000001CDS9287639292876518-
GWHAAZE00000001CDS9286903292869185-
GWHAAZE00000001CDS9286113092861262-
Transcript Sequence

Network for GWHGAAZE003150

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13417.7GST_N_3371132.30E-18
PF13410.7GST_C_21462147.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00799GST, gst Metabolic pathways map01100
Glutathione metabolismmap00480
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982
Drug metabolism - other enzymesmap00983
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.050
SRR3591706second leaf30.351
SRR3591707mature leaf32.735
SRR3591708Shoot apex29.547
SRR3591709Stem28.002
SRR3591710White floral bud42.640
SRR3591711White flower160.989
SRR3591712Green floral bud22.252
SRR3591713Yellow flower259.154
SRP173429 SRR8316895Juvenile bud stage 13.870
SRR8316896Juvenile bud stage 24.451
SRR8316897Juvenile bud stage 8.392
SRR8316894Third green stage 8.747
SRR8316900Third green stage 29.167
SRR8316901Third green stage 25.823
SRR8316898Complete white stage 9.846
SRR8316899Complete white stage 18.002
SRR8316903Complete white stage 15.601
SRR8316902Silver flowering stage54.179
SRR8316904Silver flowering stage62.114
SRR8316905Silver flowering stage40.124
SRR8316906Gold flowering stage 188.549
SRR8316907Gold flowering stage 203.697
SRR8316908Gold flowering stage 115.512
SRP132670SRR6706286Control22.225
SRR6706287Light intensity 50%21.526
SRR6706288Light intensity 20%21.608
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.006
CNS0095593Slightly white alabastrum(diploid) 220.685
CNS0095594Slightly white alabastrum(diploid) 326.990
CNS0095595Whole white alabastrum(diploid) 226.340
CNS0095596Whole white alabastrum(diploid) 321.971
CNS0095597Whole white alabastrum(diploid) 423.132
CNS0095598Silvery flower (diploied) 143.513
CNS0095599Silvery flower (diploied) 257.824
CNS0095600Silvery flower (diploied) 3134.767
CNS0095601Golden flower (diploid) 159.616
CNS0095602Golden flower (diploid) 2155.498
CNS0095603Golden flower (diploid) 3152.452
CNS0095604Slightly white alabastrum(tetraploid) 126.405
CNS0095605Slightly white alabastrum(tetraploid) 225.709
CNS0095606Slightly white alabastrum(tetraploid) 330.942
CNS0095607Whole white alabastrum(tetraploid) 121.811
CNS0095608Whole white alabastrum(tetraploid) 220.971
CNS0095609Whole white alabastrum(tetraploid) 330.071
CNS0095610Silvery flower (tetraploid) 193.096
CNS0095611Silvery flower (tetraploid) 2179.115
CNS0095612Silvery flower (tetraploid) 3331.148
CNS0095613Golden flower (tetraploid) 182.355
CNS0095614Golden flower (tetraploid) 281.318
CNS0095615Golden flower (tetraploid) 3126.457
CRA001975CRR073297Stem 126.127
CRR073298Stem 220.975
CRR073299Stem 328.568
CRR073300Leaf 124.659
CRR073301Leaf 222.831
CRR073302Leaf 326.333
CRR073303Juvenile bud 125.599
CRR073304Juvenile bud 231.596
CRR073305Juvenile bud 326.040
CRR073306Third green 133.314
CRR073307Third green 242.075
CRR073308Third green 330.367
CRR073309Second white 1340.424
CRR073310Second white 2241.177
CRR073311Second white 3220.891
CRR073312Silver flowering 1207.582
CRR073313Silver flowering 2217.163
CRR073314Silver flowering 3227.652
CRR073315Gold flowering 148.625
CRR073316Gold flowering 250.902
CRR073317Gold flowering 348.889
CRR073318Tawny withering 145.948
CRR073319Tawny withering 255.408
CRR073320Tawny withering 330.260