Detail information of GWHGAAZE003143


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006345909.13.62488E-24PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X3 [Solanum tuberosum]
Swissprottr|Q8VYA5|RSZ33_ARATH2E-10Serine/arginine-rich splicing factor RS2Z33
trEMBLtr|M1C5V0|M1C5V0_SOLTU1E-24Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400060436}

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9276083892765069-
GWHAAZE00000001mRNA9276083892765069-
GWHAAZE00000001exon9276504892765069-
GWHAAZE00000001exon9276424892764803-
GWHAAZE00000001exon9276402792764121-
GWHAAZE00000001exon9276259992762795-
GWHAAZE00000001exon9276237992762462-
GWHAAZE00000001exon9276083892761199-
GWHAAZE00000001five_prime_UTR9276504892765069-
GWHAAZE00000001five_prime_UTR9276429392764803-
GWHAAZE00000001CDS9276424892764292-
GWHAAZE00000001CDS9276402792764121-
GWHAAZE00000001CDS9276259992762795-
GWHAAZE00000001CDS9276237992762462-
GWHAAZE00000001CDS9276083892761199-
Transcript Sequence

Network for GWHGAAZE003143

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0014GO:0016973 poly(A)+ mRNA export from nucleus GOslim:biological_process
GO:0005643 nuclear pore GOslim:cellular_component
map03040 Spliceosome


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_16401.00E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12896SFRS7 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.879
SRR3591706second leaf5.640
SRR3591707mature leaf6.030
SRR3591708Shoot apex8.517
SRR3591709Stem7.101
SRR3591710White floral bud7.371
SRR3591711White flower7.665
SRR3591712Green floral bud8.714
SRR3591713Yellow flower8.551
SRP173429 SRR8316895Juvenile bud stage 5.177
SRR8316896Juvenile bud stage 7.056
SRR8316897Juvenile bud stage 2.408
SRR8316894Third green stage 1.887
SRR8316900Third green stage 5.903
SRR8316901Third green stage 6.924
SRR8316898Complete white stage 3.353
SRR8316899Complete white stage 9.412
SRR8316903Complete white stage 4.725
SRR8316902Silver flowering stage2.139
SRR8316904Silver flowering stage2.937
SRR8316905Silver flowering stage1.872
SRR8316906Gold flowering stage 3.603
SRR8316907Gold flowering stage 3.884
SRR8316908Gold flowering stage 4.935
SRP132670SRR6706286Control2.820
SRR6706287Light intensity 50%7.939
SRR6706288Light intensity 20%3.543
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.519
CNS0095593Slightly white alabastrum(diploid) 24.667
CNS0095594Slightly white alabastrum(diploid) 34.005
CNS0095595Whole white alabastrum(diploid) 22.966
CNS0095596Whole white alabastrum(diploid) 32.603
CNS0095597Whole white alabastrum(diploid) 43.318
CNS0095598Silvery flower (diploied) 14.355
CNS0095599Silvery flower (diploied) 23.333
CNS0095600Silvery flower (diploied) 33.746
CNS0095601Golden flower (diploid) 13.495
CNS0095602Golden flower (diploid) 23.421
CNS0095603Golden flower (diploid) 32.419
CNS0095604Slightly white alabastrum(tetraploid) 12.549
CNS0095605Slightly white alabastrum(tetraploid) 21.837
CNS0095606Slightly white alabastrum(tetraploid) 32.295
CNS0095607Whole white alabastrum(tetraploid) 12.185
CNS0095608Whole white alabastrum(tetraploid) 21.270
CNS0095609Whole white alabastrum(tetraploid) 33.208
CNS0095610Silvery flower (tetraploid) 12.088
CNS0095611Silvery flower (tetraploid) 21.716
CNS0095612Silvery flower (tetraploid) 31.655
CNS0095613Golden flower (tetraploid) 12.067
CNS0095614Golden flower (tetraploid) 22.824
CNS0095615Golden flower (tetraploid) 31.647
CRA001975CRR073297Stem 14.578
CRR073298Stem 24.583
CRR073299Stem 35.023
CRR073300Leaf 15.300
CRR073301Leaf 24.933
CRR073302Leaf 33.203
CRR073303Juvenile bud 13.425
CRR073304Juvenile bud 21.218
CRR073305Juvenile bud 34.353
CRR073306Third green 10.951
CRR073307Third green 21.069
CRR073308Third green 31.063
CRR073309Second white 10.778
CRR073310Second white 21.094
CRR073311Second white 30.967
CRR073312Silver flowering 10.500
CRR073313Silver flowering 20.976
CRR073314Silver flowering 31.034
CRR073315Gold flowering 11.766
CRR073316Gold flowering 22.787
CRR073317Gold flowering 31.077
CRR073318Tawny withering 14.560
CRR073319Tawny withering 22.980
CRR073320Tawny withering 34.352