Gene detail

Detail information of GWHGAAZE003136

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260128.1	2.76593E-90	PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Nelumbo nucifera]
COG	YP_693026.1	1E-31	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Swissprot	tr\|O80952\|PGPS1_ARATH	2E-86	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic (Precursor)
trEMBL	tr\|W9RFS6\|W9RFS6_9ROSA	3E-87	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313\|EMBL:EXB88497.1}
TAIR10	AT2G39290.1	1E-63	phosphatidylglycerolphosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92707896	92713290	+
GWHAAZE00000001	mRNA	92707896	92713290	+
GWHAAZE00000001	exon	92707896	92708352	+
GWHAAZE00000001	exon	92709433	92709530	+
GWHAAZE00000001	exon	92709646	92709721	+
GWHAAZE00000001	exon	92709810	92709970	+
GWHAAZE00000001	exon	92712123	92712179	+
GWHAAZE00000001	exon	92712274	92712359	+
GWHAAZE00000001	exon	92712531	92712636	+
GWHAAZE00000001	exon	92713219	92713290	+
GWHAAZE00000001	CDS	92707896	92708352	+
GWHAAZE00000001	CDS	92709433	92709530	+
GWHAAZE00000001	CDS	92709646	92709721	+
GWHAAZE00000001	CDS	92709810	92709970	+
GWHAAZE00000001	CDS	92712123	92712179	+
GWHAAZE00000001	CDS	92712274	92712359	+
GWHAAZE00000001	CDS	92712531	92712636	+
GWHAAZE00000001	CDS	92713219	92713290	+

Transcript Sequence
>GWHTAAZE003142 ATGGGTCAGCACCCTCTCCTCCTCGCCACCGCCACCTCTCATAACGCCGCACCGGCAATACCACGGAGGCGGCTGATGCGGGCTCGCGGGTGGAGGATAACACCGTGCGCACCCCTAGCCCCCTCAGCGCACGATAATAATAACAACAACAACAACTACTACTACTCCTCTCTACCCTATAGGAAGGTCTTAGGGTTTCGTGGTCAGAAAAGTTTCAGTTACTATTCCTCCGAAGAAAAAGGAGGAGAAGTATTAGGAGGAAGAGAATCTGCGACTGACATGGATAACAACAAAGATGGACTGTGGTTGGGGAATAACAAACGCTCGCCTCCGTCTTTAACGTCGCACAACAACCACCGCCTGAAACCGCCTTCTCAGCATCAGTCTGCTAAATTGCTCACATTGCCTACGATCTTGACCTTCGGCCGTGTTGCTGCCGTTCCGCTTATCGTTGGCACTTTTTATATGAATAGTTGGTGGGGAACAACTACTACGACAAGTATCTTCATTGCTGCAGCAATTACAGATTGGCTTGATGGATATATTGCTCGAAAGATGAAGTTAGGGAGTGCATTTGGTGCATTTTTGGATCCAGTAGCTGATAAGGTATGCTTCCTCTGCTTCAGTATAAGACCATCTAAAGGTTCATCATTTGATTCTCATGCTTACTGTATACAGCTTATGGTTGCTGCTACCTTGGTCTTGTTGTGTACAAGACCTCCGGACATTGCTACATTTGAACAAATGCCATGGCTATTGACTGTACCCTCAATTGCGATCATTGGTAGAGAGATAACTATGTCTGCAGTTAGAGAATGGGCTGCTACGCAGAATAGTAAACTTTCAGAGGCTGTCGCTGTAAATAATTTGGGGAAGTGGAAAACAGCCTCACAAATGACCGCACTAACCATCCTCCTCGCAACCAGAGACAGCAGGGCTGGCTGTATGGTCGCTAGTTGTGTATATGAGGAAGATATGGAAAGTATTGATCAGGTAGCAGTATCTATGGCTTCGACTTTTTACAGTTCTCACGGCGTAAGGGTAGACGGCCTCTCAGTGCTATCGACTTCGTATGGCCCTGTGGCTTTGGCATTGCCGAAATTTATTCCTTAA

Network for GWHGAAZE003136

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01066.22	CDP-OH_P_transf	135	201	1.60E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00995	pgsA, PGS1	Metabolic pathways	map01100
K00995	pgsA, PGS1	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016780	molecular_function	phosphotransferase activity, for other substituted phosphate groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.336
	SRR3591706	second leaf	16.907
	SRR3591707	mature leaf	19.610
	SRR3591708	Shoot apex	17.410
	SRR3591709	Stem	22.449
	SRR3591710	White floral bud	25.493
	SRR3591711	White flower	28.098
	SRR3591712	Green floral bud	34.066
	SRR3591713	Yellow flower	23.875
SRP173429	SRR8316895	Juvenile bud stage	10.100
	SRR8316896	Juvenile bud stage	15.048
	SRR8316897	Juvenile bud stage	7.659
	SRR8316894	Third green stage	7.505
	SRR8316900	Third green stage	26.879
	SRR8316901	Third green stage	23.044
	SRR8316898	Complete white stage	7.339
	SRR8316899	Complete white stage	24.429
	SRR8316903	Complete white stage	11.823
	SRR8316902	Silver flowering stage	9.645
	SRR8316904	Silver flowering stage	11.278
	SRR8316905	Silver flowering stage	6.881
	SRR8316906	Gold flowering stage	21.038
	SRR8316907	Gold flowering stage	20.833
	SRR8316908	Gold flowering stage	27.498
SRP132670	SRR6706286	Control	20.306
	SRR6706287	Light intensity 50%	21.712
	SRR6706288	Light intensity 20%	24.020
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.365
	CNS0095593	Slightly white alabastrum(diploid) 2	13.100
	CNS0095594	Slightly white alabastrum(diploid) 3	16.525
	CNS0095595	Whole white alabastrum(diploid) 2	21.536
	CNS0095596	Whole white alabastrum(diploid) 3	19.323
	CNS0095597	Whole white alabastrum(diploid) 4	19.471
	CNS0095598	Silvery flower (diploied) 1	16.094
	CNS0095599	Silvery flower (diploied) 2	9.378
	CNS0095600	Silvery flower (diploied) 3	18.504
	CNS0095601	Golden flower (diploid) 1	11.299
	CNS0095602	Golden flower (diploid) 2	19.546
	CNS0095603	Golden flower (diploid) 3	20.019
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.206
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.641
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.227
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.564
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.519
	CNS0095610	Silvery flower (tetraploid) 1	17.019
	CNS0095611	Silvery flower (tetraploid) 2	21.865
	CNS0095612	Silvery flower (tetraploid) 3	20.903
	CNS0095613	Golden flower (tetraploid) 1	10.714
	CNS0095614	Golden flower (tetraploid) 2	14.871
	CNS0095615	Golden flower (tetraploid) 3	14.882
CRA001975	CRR073297	Stem 1	24.909
	CRR073298	Stem 2	20.193
	CRR073299	Stem 3	20.619
	CRR073300	Leaf 1	23.522
	CRR073301	Leaf 2	18.644
	CRR073302	Leaf 3	21.785
	CRR073303	Juvenile bud 1	21.755
	CRR073304	Juvenile bud 2	16.629
	CRR073305	Juvenile bud 3	18.248
	CRR073306	Third green 1	8.997
	CRR073307	Third green 2	9.906
	CRR073308	Third green 3	8.231
	CRR073309	Second white 1	15.292
	CRR073310	Second white 2	16.200
	CRR073311	Second white 3	15.448
	CRR073312	Silver flowering 1	15.952
	CRR073313	Silver flowering 2	13.565
	CRR073314	Silver flowering 3	11.871
	CRR073315	Gold flowering 1	14.005
	CRR073316	Gold flowering 2	12.039
	CRR073317	Gold flowering 3	9.249
	CRR073318	Tawny withering 1	22.547
	CRR073319	Tawny withering 2	12.545
	CRR073320	Tawny withering 3	17.632