Detail information of GWHGAAZE003113


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDX78381.17.85856E-32BnaA03g02930D [Brassica napus]
Swissprottr|P48348|14338_ARATH1E-3014-3-3-like protein GF14 kappa
trEMBLtr|A0A078CMG2|A0A078CMG2_BRANA3E-32BnaA03g02930D protein {ECO:0000313|EMBL:CDX78381.1}
TAIR10AT5G65430.13E-22general regulatory factor 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9231354592317212-
GWHAAZE00000001mRNA9231354592317212-
GWHAAZE00000001exon9231354592314432-
GWHAAZE00000001exon9231510992315252-
GWHAAZE00000001exon9231659892317212-
GWHAAZE00000001CDS9231659892317212-
GWHAAZE00000001CDS9231510992315252-
GWHAAZE00000001CDS9231354592314432-
Transcript Sequence

Network for GWHGAAZE003113

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00244.212014/3/3291795.60E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06630YWHAE MAPK signaling pathway - yeast map04011
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
PI3K-Akt signaling pathwaymap04151
Cell cyclemap04110
Oocyte meiosismap04114
NOD-like receptor signaling pathwaymap04621
Neurotrophin signaling pathwaymap04722

Gene Ontology

GO term OntologyName
GO:0019904molecular_functionprotein domain specific binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 3.114
SRR8316896Juvenile bud stage 5.115
SRR8316897Juvenile bud stage 2.085
SRR8316894Third green stage 1.864
SRR8316900Third green stage 3.924
SRR8316901Third green stage 2.734
SRR8316898Complete white stage 0.490
SRR8316899Complete white stage 3.342
SRR8316903Complete white stage 0.799
SRR8316902Silver flowering stage0.218
SRR8316904Silver flowering stage0.875
SRR8316905Silver flowering stage0.382
SRR8316906Gold flowering stage 1.675
SRR8316907Gold flowering stage 0.669
SRR8316908Gold flowering stage 0.856
SRP132670SRR6706286Control4.231
SRR6706287Light intensity 50%3.856
SRR6706288Light intensity 20%5.082
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.792
CNS0095593Slightly white alabastrum(diploid) 21.554
CNS0095594Slightly white alabastrum(diploid) 32.434
CNS0095595Whole white alabastrum(diploid) 21.736
CNS0095596Whole white alabastrum(diploid) 31.869
CNS0095597Whole white alabastrum(diploid) 40.732
CNS0095598Silvery flower (diploied) 10.676
CNS0095599Silvery flower (diploied) 21.091
CNS0095600Silvery flower (diploied) 31.076
CNS0095601Golden flower (diploid) 11.166
CNS0095602Golden flower (diploid) 21.675
CNS0095603Golden flower (diploid) 31.617
CNS0095604Slightly white alabastrum(tetraploid) 12.164
CNS0095605Slightly white alabastrum(tetraploid) 21.932
CNS0095606Slightly white alabastrum(tetraploid) 31.709
CNS0095607Whole white alabastrum(tetraploid) 10.782
CNS0095608Whole white alabastrum(tetraploid) 20.492
CNS0095609Whole white alabastrum(tetraploid) 33.341
CNS0095610Silvery flower (tetraploid) 11.080
CNS0095611Silvery flower (tetraploid) 21.235
CNS0095612Silvery flower (tetraploid) 31.259
CNS0095613Golden flower (tetraploid) 10.228
CNS0095614Golden flower (tetraploid) 21.390
CNS0095615Golden flower (tetraploid) 30.489
CRA001975CRR073297Stem 15.045
CRR073298Stem 24.515
CRR073299Stem 33.622
CRR073300Leaf 13.453
CRR073301Leaf 24.149
CRR073302Leaf 32.943
CRR073303Juvenile bud 11.944
CRR073304Juvenile bud 22.353
CRR073305Juvenile bud 32.464
CRR073306Third green 10.168
CRR073307Third green 20.935
CRR073308Third green 30.869
CRR073309Second white 10.377
CRR073310Second white 20.270
CRR073311Second white 30.209
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.048
CRR073314Silver flowering 30.678
CRR073315Gold flowering 11.752
CRR073316Gold flowering 21.195
CRR073317Gold flowering 31.223
CRR073318Tawny withering 10.763
CRR073319Tawny withering 20.932
CRR073320Tawny withering 31.671