Gene detail

Detail information of GWHGAAZE003030

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFB82644.1	1.0213E-135	NAC transcription factor [Camellia sinensis]
Swissprot	tr\|Q84TE6\|NAC22_ARATH	4E-97	NAC domain-containing protein 21/22
trEMBL	tr\|H6VQ89\|H6VQ89_CAMSI	4E-136	NAC transcription factor {ECO:0000313\|EMBL:AFB82644.1}
TAIR10	AT1G56010.2	8E-67	NAC domain containing protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90384115	90387661	-
GWHAAZE00000001	mRNA	90384115	90387661	-
GWHAAZE00000001	exon	90387493	90387661	-
GWHAAZE00000001	exon	90385541	90385737	-
GWHAAZE00000001	exon	90384115	90384639	-
GWHAAZE00000001	CDS	90387493	90387661	-
GWHAAZE00000001	CDS	90385541	90385737	-
GWHAAZE00000001	CDS	90384115	90384639	-

Transcript Sequence
>GWHTAAZE003034 ATGAGCAACCTAAGCATAGTGGAGGCAAATTTGCCGGCGGGGTTTAGGTTCCATCCAAGGGACACAGAGCTGATATGTGATTACTTGATGAAGAAGGTTGCTCGATGCGAGCAGCCTCCCACTTTGATCGAAGTTGACCTCAACAAGTGCGAGCCTTGGGACATTCCTGGGAAGGAATGGTATTTTTACAGCCAGCGTGACCGGAAATATGCAACTGGGCTAAGAACGAACAGGGCCACTGTGTCGGGGTATTGGAAGGCCACGGGGAAAGACAGACCCGTAATTCGTAGGGTTACCCTTGTTGGGATGAGGAAGACTTTGGTTTTCTACCAAGGTAGGGCACCCAAAGGAAGAAAAACGGATTGGGAGGATTGGGTACTATGTAGAGTGTTCTACAAAAACAGAGAAGTTGCTGCCAAACAGGGAATGGGAAACAGCTACAATAATCATTATGATGACAATTTAAGTTCTTCATCTCTCCCACCTCTAATGGATCCCTACATCACTTTCGACCAAACTCTTCAAACCAATAATAATAACCTAAATCTAAATAATAACAACGACCAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCACCCCTAACCAAACTTTCTCTGATCACATCACCCACATGGACCCAAACATTATCTCTACCAAAATTCCTTCTACTAATAATATAACCACATTTGGAGCTATGCCTGATATTGCTTCATACTTAAACCCTTCTCCCTCTTGTGATAAAAAGGTGATTAAAGCTGTTCTAAATCATCTTAGTAATATGGACACAAATCCTAATTACATGATCAAAGAGTCCCCTAGCTTTGGGGAAGGAAGTTCAGAGAGCTTTTTATCTGATGTGGGCTTGCCTAACATGTGGTACCATTACTGA

Network for GWHGAAZE003030

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	12	126	4.10E-28

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.318
	SRR3591706	second leaf	0.269
	SRR3591707	mature leaf	5.839
	SRR3591708	Shoot apex	0.300
	SRR3591709	Stem	24.252
	SRR3591710	White floral bud	31.815
	SRR3591711	White flower	125.813
	SRR3591712	Green floral bud	2.928
	SRR3591713	Yellow flower	165.244
SRP173429	SRR8316895	Juvenile bud stage	6.549
	SRR8316896	Juvenile bud stage	11.249
	SRR8316897	Juvenile bud stage	6.559
	SRR8316894	Third green stage	0.836
	SRR8316900	Third green stage	3.703
	SRR8316901	Third green stage	10.128
	SRR8316898	Complete white stage	12.354
	SRR8316899	Complete white stage	17.589
	SRR8316903	Complete white stage	20.912
	SRR8316902	Silver flowering stage	38.222
	SRR8316904	Silver flowering stage	47.241
	SRR8316905	Silver flowering stage	22.555
	SRR8316906	Gold flowering stage	58.494
	SRR8316907	Gold flowering stage	79.098
	SRR8316908	Gold flowering stage	60.570
SRP132670	SRR6706286	Control	4.814
	SRR6706287	Light intensity 50%	3.010
	SRR6706288	Light intensity 20%	2.735
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.551
	CNS0095593	Slightly white alabastrum(diploid) 2	10.745
	CNS0095594	Slightly white alabastrum(diploid) 3	7.086
	CNS0095595	Whole white alabastrum(diploid) 2	5.757
	CNS0095596	Whole white alabastrum(diploid) 3	1.671
	CNS0095597	Whole white alabastrum(diploid) 4	7.136
	CNS0095598	Silvery flower (diploied) 1	21.079
	CNS0095599	Silvery flower (diploied) 2	32.426
	CNS0095600	Silvery flower (diploied) 3	44.458
	CNS0095601	Golden flower (diploid) 1	24.687
	CNS0095602	Golden flower (diploid) 2	53.786
	CNS0095603	Golden flower (diploid) 3	52.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.555
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.772
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.571
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.891
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.344
	CNS0095610	Silvery flower (tetraploid) 1	47.333
	CNS0095611	Silvery flower (tetraploid) 2	21.267
	CNS0095612	Silvery flower (tetraploid) 3	17.336
	CNS0095613	Golden flower (tetraploid) 1	33.105
	CNS0095614	Golden flower (tetraploid) 2	35.209
	CNS0095615	Golden flower (tetraploid) 3	49.431
CRA001975	CRR073297	Stem 1	0.801
	CRR073298	Stem 2	1.841
	CRR073299	Stem 3	0.562
	CRR073300	Leaf 1	2.563
	CRR073301	Leaf 2	2.617
	CRR073302	Leaf 3	0.555
	CRR073303	Juvenile bud 1	1.936
	CRR073304	Juvenile bud 2	0.691
	CRR073305	Juvenile bud 3	3.017
	CRR073306	Third green 1	6.168
	CRR073307	Third green 2	13.608
	CRR073308	Third green 3	11.211
	CRR073309	Second white 1	15.898
	CRR073310	Second white 2	7.497
	CRR073311	Second white 3	6.147
	CRR073312	Silver flowering 1	11.748
	CRR073313	Silver flowering 2	8.700
	CRR073314	Silver flowering 3	10.425
	CRR073315	Gold flowering 1	0.176
	CRR073316	Gold flowering 2	1.143
	CRR073317	Gold flowering 3	0.253
	CRR073318	Tawny withering 1	26.695
	CRR073319	Tawny withering 2	17.486
	CRR073320	Tawny withering 3	12.436