Gene detail

Detail information of GWHGAAZE003012

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13643.1	0	unnamed protein product [Coffea canephora]
COG	YP_004907948.1	2E-16	hypothetical protein KSE_62270
Swissprot	tr\|O22212\|PRP4L_ARATH	0.0000001	U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBL	tr\|A0A068V182\|A0A068V182_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13643.1}
TAIR10	AT3G13340.2	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90037840	90042720	+
GWHAAZE00000001	mRNA	90037840	90042720	+
GWHAAZE00000001	exon	90037840	90037902	+
GWHAAZE00000001	exon	90038409	90038552	+
GWHAAZE00000001	exon	90038789	90038956	+
GWHAAZE00000001	exon	90039076	90039162	+
GWHAAZE00000001	exon	90039293	90039427	+
GWHAAZE00000001	exon	90039533	90039643	+
GWHAAZE00000001	exon	90040623	90040714	+
GWHAAZE00000001	exon	90040799	90040898	+
GWHAAZE00000001	exon	90041542	90041628	+
GWHAAZE00000001	exon	90042307	90042720	+
GWHAAZE00000001	CDS	90037840	90037902	+
GWHAAZE00000001	CDS	90038409	90038552	+
GWHAAZE00000001	CDS	90038789	90038956	+
GWHAAZE00000001	CDS	90039076	90039162	+
GWHAAZE00000001	CDS	90039293	90039427	+
GWHAAZE00000001	CDS	90039533	90039643	+
GWHAAZE00000001	CDS	90040623	90040714	+
GWHAAZE00000001	CDS	90040799	90040898	+
GWHAAZE00000001	CDS	90041542	90041628	+
GWHAAZE00000001	CDS	90042307	90042720	+

Transcript Sequence
>GWHTAAZE003016 GCTAAAGATATCCATCAAAGTGTCATTTGCTTTCTTTTGGCATCATTCAATGAAGTAGGAACAATCATGTCCCATCACCAAGGTGATGACGCTGATTATATGGCAGATGAATATGAAATGGAGGACGGAGATGATGATATGGATGAAGAGTTTCGGGGCAGAGATACGGGCGGCTCAGATTCTGATGTGGATGAATATGACCACTTGAATAACAAAATGGCAGATACTTCAGCTGCTCAGGCTAGGAGAGGCAAAGACATCCAGGGCATTCCTTGGGAAAGGCTTAGCATCACCAGGGAGAAGTACAGGCAGACTAGACTAGAACAGTACAGGAACTACGAAAACATTCCTCAATCTGGAGAGGGGTCAGAGAAGGAATGCAAAATTACAAAAAAAGGGGGATTGTATTACGAGTTCAGACGCAATTCAAGATCTGTGAAATCGACAATTCTTCATTTTCAGCTGAGGAACTTGGTTTGGGCTACATCAAAGCATGATGTTTACCTGATGTCACATTTCTCTGTAATTCATTGGTCATCCTTAACTTGCAATAGGTCTGAAGTTCTCAATGTATCAGGACACGTGGCACCATGTGAGAAACATCCTGGGAGCCTATTGGAAGGATTTACCCAAACCCAAGTTAGCACACTAGCAGTCAAAGATAACTTGCTAGTTGCCGGAGGATTTCAGGGAGAGCTTATATGCAAATATTTAGATAGACCTGGAGTGTGCTTCTGTTCCAGGACAACTTATGATGATAATGCTATCACTAATGCTATAGAGATTTATAACACTGCCAGTGGTGCACTTCATTTTACGGCCTCAAATAATGACAGCGGAGTTAGAGACTTTGATATGGAGAAATTCCAACTTACTAAGCATTTTCGTTTTCCTTGGCCACATACATCCCAGAGTCCCGATGGTAAGCTTCTTATTATAGTTGGAGATAATCCAGATGGTTTATTGGTGGATTCCAGAACTGGAAAGACGGTTGCATCCTTGTGCGGGCACTTGGATTACTCATTTGCATCGGCATGGAACCCTGATGGTCTGACTTTTGCAACTGGGAACCAGGATAAGACCTGCAGAATCTGGGATATTCGGAACACATCAAAGTCAGTTGCTGCCTTGAAGGGTAACCTCGGAGCCATCCGATCAATCCGCTACACATCCGATGGTCGGTTCATGGCTATGGCGGAGCCCGCTGACTTTGTCCATGTATTTGATGTGAAGAGTGGATACGAGAAGGAGCAAGAAATTGATTTCTTTGGCGAGATATCCGGGATGTCTTTCAGTCCTGATACGGAATCCCTTTTTGTTGGAGTGTGGGATCGTACATACGGAAGCCTGCTTGAGTTTGGAAGGTGCAGGAACTACTCGTATCTCGATACCCTCATTTGA

Network for GWHGAAZE003012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	329	366	0.00022

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.192
	SRR3591706	second leaf	45.187
	SRR3591707	mature leaf	47.016
	SRR3591708	Shoot apex	57.611
	SRR3591709	Stem	70.008
	SRR3591710	White floral bud	83.757
	SRR3591711	White flower	92.703
	SRR3591712	Green floral bud	67.548
	SRR3591713	Yellow flower	93.481
SRP173429	SRR8316895	Juvenile bud stage	33.600
	SRR8316896	Juvenile bud stage	51.752
	SRR8316897	Juvenile bud stage	23.460
	SRR8316894	Third green stage	23.246
	SRR8316900	Third green stage	60.325
	SRR8316901	Third green stage	59.721
	SRR8316898	Complete white stage	44.056
	SRR8316899	Complete white stage	98.170
	SRR8316903	Complete white stage	58.452
	SRR8316902	Silver flowering stage	43.526
	SRR8316904	Silver flowering stage	61.175
	SRR8316905	Silver flowering stage	33.231
	SRR8316906	Gold flowering stage	131.077
	SRR8316907	Gold flowering stage	105.575
	SRR8316908	Gold flowering stage	104.141
SRP132670	SRR6706286	Control	64.453
	SRR6706287	Light intensity 50%	67.839
	SRR6706288	Light intensity 20%	62.215
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.616
	CNS0095593	Slightly white alabastrum(diploid) 2	31.615
	CNS0095594	Slightly white alabastrum(diploid) 3	31.595
	CNS0095595	Whole white alabastrum(diploid) 2	34.499
	CNS0095596	Whole white alabastrum(diploid) 3	34.941
	CNS0095597	Whole white alabastrum(diploid) 4	42.268
	CNS0095598	Silvery flower (diploied) 1	47.733
	CNS0095599	Silvery flower (diploied) 2	50.030
	CNS0095600	Silvery flower (diploied) 3	91.512
	CNS0095601	Golden flower (diploid) 1	63.886
	CNS0095602	Golden flower (diploid) 2	87.283
	CNS0095603	Golden flower (diploid) 3	86.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.934
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.208
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.651
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.798
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.158
	CNS0095610	Silvery flower (tetraploid) 1	79.095
	CNS0095611	Silvery flower (tetraploid) 2	88.872
	CNS0095612	Silvery flower (tetraploid) 3	82.530
	CNS0095613	Golden flower (tetraploid) 1	65.011
	CNS0095614	Golden flower (tetraploid) 2	80.960
	CNS0095615	Golden flower (tetraploid) 3	105.639
CRA001975	CRR073297	Stem 1	57.140
	CRR073298	Stem 2	52.832
	CRR073299	Stem 3	56.012
	CRR073300	Leaf 1	63.540
	CRR073301	Leaf 2	55.304
	CRR073302	Leaf 3	51.154
	CRR073303	Juvenile bud 1	56.556
	CRR073304	Juvenile bud 2	59.783
	CRR073305	Juvenile bud 3	72.691
	CRR073306	Third green 1	63.242
	CRR073307	Third green 2	54.105
	CRR073308	Third green 3	61.321
	CRR073309	Second white 1	75.690
	CRR073310	Second white 2	75.517
	CRR073311	Second white 3	65.898
	CRR073312	Silver flowering 1	72.036
	CRR073313	Silver flowering 2	80.905
	CRR073314	Silver flowering 3	60.542
	CRR073315	Gold flowering 1	36.822
	CRR073316	Gold flowering 2	46.026
	CRR073317	Gold flowering 3	40.439
	CRR073318	Tawny withering 1	55.944
	CRR073319	Tawny withering 2	55.956
	CRR073320	Tawny withering 3	60.572