Gene detail

Detail information of GWHGAAZE003005

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095629.1	9.1571E-127	PREDICTED: probable calcium-binding protein CML21 [Sesamum indicum]
COG	YP_001657381.1	0.0000008	hypothetical protein MAE_23670
Swissprot	tr\|Q52K82\|CML21_ARATH	4E-110	Probable calcium-binding protein CML21
trEMBL	tr\|D7UAN9\|D7UAN9_VITVI	1E-126	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39804.3}
TAIR10	AT4G26470.1	7E-88	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89916386	89918241	-
GWHAAZE00000001	mRNA	89916386	89918241	-
GWHAAZE00000001	exon	89918046	89918241	-
GWHAAZE00000001	exon	89917303	89917505	-
GWHAAZE00000001	exon	89916946	89917120	-
GWHAAZE00000001	exon	89916386	89916743	-
GWHAAZE00000001	CDS	89918046	89918241	-
GWHAAZE00000001	CDS	89917303	89917505	-
GWHAAZE00000001	CDS	89916946	89917120	-
GWHAAZE00000001	CDS	89916637	89916743	-
GWHAAZE00000001	three_prime_UTR	89916386	89916636	-

Transcript Sequence
>GWHTAAZE003009 ATGGGAGGAGCTGCGGGAAAGGATGGTTCACCTAAGGCTTGGATACCCGAGACAAAGCTTGAGGCCAGAATAACAGAGGCAATTCAGCGTAGAGAAACTCAAGGAAGTTCCATGAAATCATTCAACAGTATAATCCTCAAATTCCCAAAAATCGATGCGAGTTTAAGAAAATGCAAAGCTAGCTTTCAGCAATTTGACGAGGATGGAAGTGGTGCAATAGATCCAGAAGAGTTGAGGCGCTGCTTCCATAAACTAGAGGTCAATTTTACGGACGAGGAAATCAATGATCTGTTTGAGGCTTGCGATATTAATGACGACATGGGGATAAGTTTCAATGAGTTCATTGTTCTTCTTTGCCTTGTCTATCTTTTGAAGAAGGATCCCGCTGCTTCTCAGGCTAACTCACAAATGGGAATACCAGCTCTAGAGGCAACATTCGACATTATAGTTGACACATTTGTGTTCTTGGACAAGAACAGGGACGGCCATGTGAGCAAGAGCGAGATGGTTCATGCAATCAATGAAACTAGTTCAGGTGAACGATCTTCTGGGCGAATAGCCATGAAAAGATTCGAGGAAATGGACTGGGATAAAAATGGAATGGTGAACTTCAAGGAATTTCTTTTTGCTTTTACTCGTTGGGTCGGAATCGATAACGAGGATGAAGATGATGAAGCTTGAATAGCAAGTCTGAAGCATGCTTAGGTTGAAGAAGAGAAGATTAAGCTTTCCACGACAGTTGAAAAGTGAGGATCAAATCATGTACCTCTTCAACTTGCTAGTGTAAATAGCATCAGAGTAATAATAGAACCTGTTGCAGCCAAAACTTAAAAAAGACGGCATGCCTTTTATACTTAAAGTTATGTAATATTTTTCTTTTACTTATTTCATCCATCTCTGAGAGGACTACATTTATGCATAGCGTTAGTACT

Network for GWHGAAZE003005

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	57	116	3.90E-12
PF13202.7	EF-hand_5	149	169	5.40E-05
PF13833.7	EF-hand_8	191	213	0.029

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.180
	SRR3591706	second leaf	4.882
	SRR3591707	mature leaf	10.310
	SRR3591708	Shoot apex	9.204
	SRR3591709	Stem	13.432
	SRR3591710	White floral bud	40.222
	SRR3591711	White flower	17.672
	SRR3591712	Green floral bud	34.090
	SRR3591713	Yellow flower	23.819
SRP173429	SRR8316895	Juvenile bud stage	15.081
	SRR8316896	Juvenile bud stage	22.198
	SRR8316897	Juvenile bud stage	7.372
	SRR8316894	Third green stage	8.959
	SRR8316900	Third green stage	36.826
	SRR8316901	Third green stage	30.816
	SRR8316898	Complete white stage	15.707
	SRR8316899	Complete white stage	23.493
	SRR8316903	Complete white stage	21.502
	SRR8316902	Silver flowering stage	11.590
	SRR8316904	Silver flowering stage	16.514
	SRR8316905	Silver flowering stage	7.195
	SRR8316906	Gold flowering stage	26.924
	SRR8316907	Gold flowering stage	25.507
	SRR8316908	Gold flowering stage	23.945
SRP132670	SRR6706286	Control	9.023
	SRR6706287	Light intensity 50%	10.960
	SRR6706288	Light intensity 20%	10.874
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.267
	CNS0095593	Slightly white alabastrum(diploid) 2	21.304
	CNS0095594	Slightly white alabastrum(diploid) 3	30.344
	CNS0095595	Whole white alabastrum(diploid) 2	43.479
	CNS0095596	Whole white alabastrum(diploid) 3	49.349
	CNS0095597	Whole white alabastrum(diploid) 4	41.914
	CNS0095598	Silvery flower (diploied) 1	22.807
	CNS0095599	Silvery flower (diploied) 2	26.576
	CNS0095600	Silvery flower (diploied) 3	35.827
	CNS0095601	Golden flower (diploid) 1	30.331
	CNS0095602	Golden flower (diploid) 2	36.074
	CNS0095603	Golden flower (diploid) 3	34.962
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.247
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.730
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.475
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.968
	CNS0095610	Silvery flower (tetraploid) 1	33.479
	CNS0095611	Silvery flower (tetraploid) 2	39.003
	CNS0095612	Silvery flower (tetraploid) 3	41.067
	CNS0095613	Golden flower (tetraploid) 1	35.200
	CNS0095614	Golden flower (tetraploid) 2	32.219
	CNS0095615	Golden flower (tetraploid) 3	52.282
CRA001975	CRR073297	Stem 1	16.887
	CRR073298	Stem 2	13.870
	CRR073299	Stem 3	11.430
	CRR073300	Leaf 1	19.635
	CRR073301	Leaf 2	12.129
	CRR073302	Leaf 3	15.874
	CRR073303	Juvenile bud 1	14.080
	CRR073304	Juvenile bud 2	16.334
	CRR073305	Juvenile bud 3	6.517
	CRR073306	Third green 1	14.176
	CRR073307	Third green 2	11.868
	CRR073308	Third green 3	10.956
	CRR073309	Second white 1	12.802
	CRR073310	Second white 2	18.389
	CRR073311	Second white 3	13.786
	CRR073312	Silver flowering 1	13.266
	CRR073313	Silver flowering 2	9.188
	CRR073314	Silver flowering 3	8.042
	CRR073315	Gold flowering 1	21.103
	CRR073316	Gold flowering 2	18.410
	CRR073317	Gold flowering 3	11.941
	CRR073318	Tawny withering 1	12.366
	CRR073319	Tawny withering 2	13.409
	CRR073320	Tawny withering 3	9.854