Gene detail

Detail information of GWHGAAZE002998

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095612.1	0	PREDICTED: probable galactinol--sucrose galactosyltransferase 1 [Sesamum indicum]
COG	YP_004464004.1	4E-71	raffinose synthase
Swissprot	tr\|Q84VX0\|RFS1_ARATH	0	Probable galactinol--sucrose galactosyltransferase 1
trEMBL	tr\|A0A059BWV4\|A0A059BWV4_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW70429.1}
TAIR10	AT1G55740.1	0	seed imbibition 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89821537	89830981	+
GWHAAZE00000001	mRNA	89821537	89830981	+
GWHAAZE00000001	exon	89821537	89821727	+
GWHAAZE00000001	exon	89822076	89822314	+
GWHAAZE00000001	exon	89822424	89822514	+
GWHAAZE00000001	exon	89828259	89828307	+
GWHAAZE00000001	exon	89828424	89828515	+
GWHAAZE00000001	exon	89828709	89828816	+
GWHAAZE00000001	exon	89828914	89829048	+
GWHAAZE00000001	exon	89829139	89829549	+
GWHAAZE00000001	exon	89829649	89829790	+
GWHAAZE00000001	exon	89829892	89829959	+
GWHAAZE00000001	exon	89830057	89830191	+
GWHAAZE00000001	exon	89830292	89830509	+
GWHAAZE00000001	exon	89830605	89830981	+
GWHAAZE00000001	CDS	89821537	89821727	+
GWHAAZE00000001	CDS	89822076	89822314	+
GWHAAZE00000001	CDS	89822424	89822514	+
GWHAAZE00000001	CDS	89828259	89828307	+
GWHAAZE00000001	CDS	89828424	89828515	+
GWHAAZE00000001	CDS	89828709	89828816	+
GWHAAZE00000001	CDS	89828914	89829048	+
GWHAAZE00000001	CDS	89829139	89829549	+
GWHAAZE00000001	CDS	89829649	89829790	+
GWHAAZE00000001	CDS	89829892	89829959	+
GWHAAZE00000001	CDS	89830057	89830191	+
GWHAAZE00000001	CDS	89830292	89830509	+
GWHAAZE00000001	CDS	89830605	89830981	+

Transcript Sequence
>GWHTAAZE003002 ATGACGGTTGGGGCCGGAATATCTGTCGGCGATGGAAAGCTTAATGTGTTGGGAAACGTTATTCTTACCGACGTTCACGACAACATTTTTGTCTCTCCGGCCACCGGCGATGGTTTGGTCAATGGCGCCTTCATTGGAGTCCGATCCGATCAGACTGGCAGCCGCCGTGTCTTCCCCGTCGGAAAACTCCAGGGGTTGAGATTTATGTGCGTGTTCAGATTCAAGTTATGGTGGATGACACAGAGGATGGGGTCATGTGGGCAAGACATACCCTTCGAGACCCAGTTTCTGCTTGTTGAAGGACATGAGGGTTCGCATTTCGGTGACGATGATGCATTGTACACGGTTTTCTTGCCAATTCTGGAAGGGGATTTCAGGGCTGTTCTTCAGGGGAATCATAATAATGAATTGGAGATCTGTTTGGAAAGTGGGGATCCAGCAGTGCGAGGATTTGAAGGGAGCCATCTTGTTTTTGCGGCGGCTGGATCTAACCCATTTGATGTTGTCACTAACGCAGTAAAGACTATTGAGAGACATTTGCAAACATTTTGTCACCGCGAGAGAAAAAAGATGCCAGACATGTTGAACTGGTTTGGCTGGTGTACTTGGGATGCTTTCTATACGGATGTTACTGCCAAGGGGGTGAAGAATGGATTAGACAGTTTGGAGAAAGGTGGGATTCCCCCAAAGTTTGTTATAATTGATGACGGATGGCAATCAGTTGCAATGGATCCAACTAGTGTTGAAGCAAAAGCCGACAACACAGCCAACTTTGCAAACAGGCTAACTCATATCAAAGAGAACCACAAATTCCAGAAAGATGGCAAAGAGGGTCACAGGGTGGAGGATCCAGCAAAGGGACTTTGCCACATTGTCACAGACATTAAAGACCAACATGCTATAAAGTATGTTTATGTCTGGCATGCGATAACCGGGTATTGGGGTGGGGTCCGACCTGGAGTGGCTGGAATGGAGCACTATGACTCCAAGTTGGCTTACCCCATTTCATCTCCTGGGGTTGAGTCGAATGAGCCTTGTGATGCTTTGAAGAGCATTACCACTAACGGTCTTGGCCTTGTGAACCCGGAGAAAGTTTTTAACTTTTATAATGAATTGCACTCTTACCTTGCATCTGCTGGCATTGATGGGGTCAAAGTAGACGTTCAGAATATTCTTGAAACTCTTGGTGCTGGCCATGGTGGACGAGTGACACTTGCTAGGAAATATCATCAGGCATTAGAGGCGTCTATTTCTAGGAACTTCCCAGATAATGGAATTATCTCTTGCATGAGTCACAACACGGACAGTTTATACAGCGTAAAAAGGACGGCTGTTATAAGGGCATCGGATGATTTCTGGCCCCGAGATCCAGCATCTCACACAATTCACATTGCTTCGGTTGCTTACAATACAATTTTCTTAGGAGAGTTCATGCAACCAGATTGGGACATGTTTCATAGCTTACACCCCATGGCTGAATATCATGGAGCTGCCCGTGCTGTAGGAGGGTGTGCAATCTATGTCAGTGACAAGCCTGGGCAACATGACTTTGATTTGCTGAAGAAGCTAGTACTTCCCGATGGTTCTATATTGCGTGCCAAGCTTCCAGGGAGACCGACTAGGGATTGCTTGTTCTCGGATCCTGCCCGAGATGGAAAAAGTCTTCTGAAGATCTGGAATCTCAATGATTTCACCGGAGTTGTTGGGGCGTTCAACTGCCAGGGTGCTGGGTGGTGTAAAGTAGGAAAGAAGAACCTCATCCATGACGAACAACCTGACACAGTCACTGGGATAATCCGAGCCAAAGATGTAGATTATTTGTCCAAAGTTGCTGATGAAAGATGGAATGGGGATGCCATTGTATATTCCCATCTTTGTGGGGATGTGGTTTATCTTCCAGTGAATGCGTCTCTTCTTTTGACACTGAAAGCGAGAGAATATGAAGTTTTCACGGTCGTTCCTGTCAAGAAACTGGCCGGTGGGGTTACATTTGCACCCGTAGGTCTTGTAAAGATGTTCAACTCTGGAGGAGCAATTAAGGAACTACAGTATGAGGTCGAGGGGAGTGGGATTGTGGGTATGAAAGTTCGGGGGTGTGGCATATTTGGGGCGTATTCATCAGTTAGACCCAAAAGGGTGATTGTTGATGGAGAGGAAACAGAGTTTAGGTACGAAGAAGAGCGCGGATTCGTCACCATTACTTTGAGAGTTCCAGAGAAAGAGTTGTACCTGTGGGACATCACAATTGAATTCTAA

Network for GWHGAAZE002998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05691.13	Raffinose_syn	8	734	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06617	E2.4.1.82	Metabolic pathways	map01100
K06617	E2.4.1.82	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.212
	SRR3591706	second leaf	2.057
	SRR3591707	mature leaf	0.405
	SRR3591708	Shoot apex	23.518
	SRR3591709	Stem	5.618
	SRR3591710	White floral bud	44.673
	SRR3591711	White flower	4.159
	SRR3591712	Green floral bud	31.675
	SRR3591713	Yellow flower	2.026
SRP173429	SRR8316895	Juvenile bud stage	10.495
	SRR8316896	Juvenile bud stage	17.836
	SRR8316897	Juvenile bud stage	7.254
	SRR8316894	Third green stage	5.779
	SRR8316900	Third green stage	23.474
	SRR8316901	Third green stage	20.877
	SRR8316898	Complete white stage	5.642
	SRR8316899	Complete white stage	16.782
	SRR8316903	Complete white stage	25.502
	SRR8316902	Silver flowering stage	2.072
	SRR8316904	Silver flowering stage	4.318
	SRR8316905	Silver flowering stage	0.930
	SRR8316906	Gold flowering stage	3.704
	SRR8316907	Gold flowering stage	3.123
	SRR8316908	Gold flowering stage	1.681
SRP132670	SRR6706286	Control	16.943
	SRR6706287	Light intensity 50%	16.773
	SRR6706288	Light intensity 20%	17.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.051
	CNS0095593	Slightly white alabastrum(diploid) 2	27.704
	CNS0095594	Slightly white alabastrum(diploid) 3	16.387
	CNS0095595	Whole white alabastrum(diploid) 2	17.356
	CNS0095596	Whole white alabastrum(diploid) 3	17.300
	CNS0095597	Whole white alabastrum(diploid) 4	16.625
	CNS0095598	Silvery flower (diploied) 1	4.463
	CNS0095599	Silvery flower (diploied) 2	7.875
	CNS0095600	Silvery flower (diploied) 3	3.646
	CNS0095601	Golden flower (diploid) 1	6.672
	CNS0095602	Golden flower (diploid) 2	3.924
	CNS0095603	Golden flower (diploid) 3	3.418
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.472
	CNS0095606	Slightly white alabastrum(tetraploid) 3	95.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.446
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.263
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.286
	CNS0095610	Silvery flower (tetraploid) 1	18.978
	CNS0095611	Silvery flower (tetraploid) 2	9.948
	CNS0095612	Silvery flower (tetraploid) 3	5.868
	CNS0095613	Golden flower (tetraploid) 1	1.278
	CNS0095614	Golden flower (tetraploid) 2	14.971
	CNS0095615	Golden flower (tetraploid) 3	46.893
CRA001975	CRR073297	Stem 1	22.264
	CRR073298	Stem 2	20.513
	CRR073299	Stem 3	27.346
	CRR073300	Leaf 1	23.623
	CRR073301	Leaf 2	21.126
	CRR073302	Leaf 3	11.759
	CRR073303	Juvenile bud 1	7.119
	CRR073304	Juvenile bud 2	6.134
	CRR073305	Juvenile bud 3	10.589
	CRR073306	Third green 1	1.095
	CRR073307	Third green 2	1.644
	CRR073308	Third green 3	2.144
	CRR073309	Second white 1	0.255
	CRR073310	Second white 2	0.270
	CRR073311	Second white 3	0.470
	CRR073312	Silver flowering 1	0.406
	CRR073313	Silver flowering 2	1.447
	CRR073314	Silver flowering 3	0.776
	CRR073315	Gold flowering 1	1.384
	CRR073316	Gold flowering 2	1.643
	CRR073317	Gold flowering 3	2.056
	CRR073318	Tawny withering 1	2.602
	CRR073319	Tawny withering 2	3.200
	CRR073320	Tawny withering 3	3.781