Gene detail

Detail information of GWHGAAZE002978

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095588.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540 [Sesamum indicum]
COG	YP_004775215.1	3E-57	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGR3\|Y4265_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor)
trEMBL	tr\|A0A068UZ75\|A0A068UZ75_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13676.1}
TAIR10	AT4G26540.1	0	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89533249	89536639	+
GWHAAZE00000001	mRNA	89533249	89536639	+
GWHAAZE00000001	exon	89533249	89536072	+
GWHAAZE00000001	exon	89536182	89536639	+
GWHAAZE00000001	CDS	89533249	89536072	+
GWHAAZE00000001	CDS	89536182	89536639	+

Transcript Sequence
>GWHTAAZE002982 ATGCCTCCACCCTCGAGGAATCCATTTCTTTCTCCCTATTTCTTCTATTTCACTCTACTTCTCCCATTAAAAACTCTCTTCTTCTCTTCTTGTTATTCCATTGATGTGCAGGGCCAAGCTCTTCTAACATGGAAGGACAGCTTAAACGGCTCCACAGACGTTCTCAAATCATGGAATTCTTCAGATCAAAGTCCTTGCAATTGGTCCGGGATTCAATGCAATACAAAAGGCGAAGTGGTGACTGTAGAATTGAAATCAGTGGATTTGCAAGGGAATTTGCCTTGGAATTTTCAGCCTCTCAAGTCATTAAACACTCTCATCCTCTCGTCCACCAATCTCACCGGTCAAATCCCGAAAGAGTTTGGAGATTATCTCGAGCTGAGCATCATTGACATCAGTGACAACTCTCTATCAGGGAGAATCCCGGTGGAAATTTGCAGGCTGAGTAAACTGCAAAAGCTCTCTCTCAATACCAATTTTCTTGAAGGTGAAATTCCGTCAGATATCGGAAATCTCTGGAGCCTTGTCAATCTTTTACTCTTCGACAATCAGCTCGACAGTGAAATCCCCAAAAGTATAGGGAAATTGAGCAATCTTGAAGTTTTCCGAGCTGGTGGAAATCAAAATCTCAAAGGGGAGCTACCACTGGAGATTGGAAACTGCACTAACTTGCTTGTGTTAGGCCTAGCTGAAACAACCATCTCTGGTAGTCTTCCTTTCTCCTTTGGGCAACTCAAAAGGATTCAAACTTTAGCCATTTACGCATCTCTACTTTCAGGTCCAATCCCCGAAGAGATTGGAAACTGCAGTGAGCTGCAGAATCTCTACTTGTACCAAAATTCAATCTCAGGTTCGATTCCAAGGCAAATTGGGGAGCTAAAAAAGCTTCAGAGTCTGCTTTTATGGCAAAACAGCATTGTCGGCACAATCCCCTATGAGCTTGGAAGCTGCCACGATCTAACGGTCATTGATTTATCAGAAAATCTACTTGTAGGAAGCATACCCACAAGTCTTGGCGACCTTTTGAACCTTCAAGAACTTCAATTGAGTGTCAATAAGTTGACAGGCACAATACCTTCAGAAATCACAAGCTGTACATCTCTGATTCATTTGGAAGTCGACAACAATGGTATTTCTGGGGAGATTCCGGTTCTAATTGGAAAATTAAAGAGCTTGACTCTGTTTTTTGCCTGGCAGAATAATCTGACAGGTAATATTCCAGAATCTCTATCCGAGTGCGAAAGTCTTGAAGCTCTCGATCTTTCTTACAATCACTTGCTTGGTCCGATACCCAAACAGATATTTGGGCTGCAAAATCTCACCAAAATGCTGCTACTTTCCAATGGTTTGTCGGGATTTATACCACCCGACATTGGAAACTGCACAAACTTGTATAGATTTAGAGTGAATGACAATAGGTTGTCAGGCACTATTCCACTGGAGATTGGAAGTTTGAAAAGCCTGAATTTTCTCGATATGAGCAACAACCTGTTCGTGGGAGGAATTCCTCCCACGATTTCCGGGTGTGGAAATCTCGAATTTCTTGATCTCCATTCAAATGGGCTCACAGGTTCTTTGCCTAATACGCTCCCCAAGAGCCTACAACTTGTGGACATTTCAGGCAATAGGCTTACGGGGTCGTTGACTCCAAGTGTTGGTTCACTAACACAATTAACCAAACTTAATCTTGGGAGGAATCAACTTTCTGGGAGAATTCCGGGGGAAATCCTATCCTGCAGTAAGCTGCAACTGTTGGATCTCGGGAACAATGGTTTCACCGGCGAAATACCCAAAGAATTGGGCCAAATTCCATCTCTTGAGATCTCTCTCAATCTCAGTTGCAACCAATTCACGGGCAAGCTCCCAACTGAGCTATCAGGTCTAACCAAATTAGGAAATCTTGATCTCTCCCACAATATGCTCACCGGTAACTTAAACATTCTCACAAGCCTTCAAAATCTTGTGTCCCTCAATGTCTCATTCAACAAATTCTCCGGTGATTTGCCTAATTCGCCATTCTTTCGCAAACTCCCTCCAGAGGACCTCGCCGGAAACCACGACCTGTACATCTCTGGCGGGGTTGTAACTCCGGCCGATCGCACAAGAGGCGCTGGCCCTGCCAGGTCAACAATGACGCTGGCAATGTCAATCCTTGTCAGTGCTAGTGCTGTGCTTGTACTACTTGCAATCTACATGTTGGTCCGGACTCGAATGGCCAAAAAGGGGCCTACGGAAGGTAACACATGGGAAATGACATTTTATCAAAAGATGGAATTTTCTGTTGATGACATAGTCCGAAATCTAACGTCAGCTAATGTGATCGGGACCGGAAGCTCTGGGGTGGTGTACAAGGTGACCACTTCAAATGGGGAAACTTTGGCAGTCAAGAAGATGTGGTCAACCGAGGAGTCTGGTGCATTTAGTTCTGAAATTCGGACCCTTGGTTCTATTAGGCACCGGAATATTGTGCGTCTATTGGGCTGGGGTTCGAACCAGAATCTGAAGCTTTTGTTCTACGATTATCTTCCTAACGGGAGCTTGAGTTCGCTCCTTCATGGTGCTGGAAAGGGAGGAGCAGAGTGGGAGGCTAGGTACGAGGTTGTGCTCGGTGTGGCCCACGCACTTGCCTACTTACACCATGACTGCATACCTGCAATCTTACATGGAGATGTTAAAGCCATGAATGTTCTGTTGGGTCCTCATCTTGAACCTTATTTAGCTGACTTTGGGCTTGCTAGGCTTGTGAACAGCACCAGTGGTGATGATCTTTCAAAGCAAAGCCCGAGACCTCAGTTAGCTGGTTCTTATGGATATATGGCTCCTGAACATGCTTCGATGCAAAGCATAACAGAGAAAAGCGATGTTTACAGCTTTGGTGTGGTTCTTTTGGAAGTTTTAACAGGGAGGCATCCGTTAGACCCGAGTTTACCAGGGGGGGCACACTTGGTTCAATGGGTCCGTGACCACTTGCAGAGTAAGCATGACCCGGTTGACATTCTTGACCCAAAGCTCAGAGGGAGGGCAGACCCACAAATGCACGAAATGTTTCAAACCCTAGCTGTTTCGTTTCTCTGTGTGAGTACACGCGCTAATGACCGTCCAATGATGAAGGATGTTGTAGCAATGCTTAAGGAAATTCGCCATGTGGATCCTTTAAGGTCAGAGTCTGAGGGGGACTTGAAGGCGGGTTTGACGGCTGTTCTTCAGTCACCTCCCACTAGAAACATGATTTTGCAAGGATCCTCGAGCTTCTCCTATGCATTCTCTAATGAATCTGTGTGA

Network for GWHGAAZE002978

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	37	74	3.50E-11
PF00069.26	Pkinase	771	974	1.30E-37

Protein Sequence

>GWHPAAZE002980
MPPPSRNPFLSPYFFYFTLLLPLKTLFFSSCYSIDVQGQALLTWKDSLNGSTDVLKSWNSSDQSPCNWSGIQCNTKGEVVTVELKSVDLQGNLPWNFQPLKSLNTLILSSTNLTGQIPKEFGDYLELSIIDISDNSLSGRIPVEICRLSKLQKLSLNTNFLEGEIPSDIGNLWSLVNLLLFDNQLDSEIPKSIGKLSNLEVFRAGGNQNLKGELPLEIGNCTNLLVLGLAETTISGSLPFSFGQLKRIQTLAIYASLLSGPIPEEIGNCSELQNLYLYQNSISGSIPRQIGELKKLQSLLLWQNSIVGTIPYELGSCHDLTVIDLSENLLVGSIPTSLGDLLNLQELQLSVNKLTGTIPSEITSCTSLIHLEVDNNGISGEIPVLIGKLKSLTLFFAWQNNLTGNIPESLSECESLEALDLSYNHLLGPIPKQIFGLQNLTKMLLLSNGLSGFIPPDIGNCTNLYRFRVNDNRLSGTIPLEIGSLKSLNFLDMSNNLFVGGIPPTISGCGNLEFLDLHSNGLTGSLPNTLPKSLQLVDISGNRLTGSLTPSVGSLTQLTKLNLGRNQLSGRIPGEILSCSKLQLLDLGNNGFTGEIPKELGQIPSLEISLNLSCNQFTGKLPTELSGLTKLGNLDLSHNMLTGNLNILTSLQNLVSLNVSFNKFSGDLPNSPFFRKLPPEDLAGNHDLYISGGVVTPADRTRGAGPARSTMTLAMSILVSASAVLVLLAIYMLVRTRMAKKGPTEGNTWEMTFYQKMEFSVDDIVRNLTSANVIGTGSSGVVYKVTTSNGETLAVKKMWSTEESGAFSSEIRTLGSIRHRNIVRLLGWGSNQNLKLLFYDYLPNGSLSSLLHGAGKGGAEWEARYEVVLGVAHALAYLHHDCIPAILHGDVKAMNVLLGPHLEPYLADFGLARLVNSTSGDDLSKQSPRPQLAGSYGYMAPEHASMQSITEKSDVYSFGVVLLEVLTGRHPLDPSLPGGAHLVQWVRDHLQSKHDPVDILDPKLRGRADPQMHEMFQTLAVSFLCVSTRANDRPMMKDVVAMLKEIRHVDPLRSESEGDLKAGLTAVLQSPPTRNMILQGSSSFSYAFSNESV

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.668
	SRR3591706	second leaf	14.778
	SRR3591707	mature leaf	7.684
	SRR3591708	Shoot apex	10.430
	SRR3591709	Stem	1.758
	SRR3591710	White floral bud	2.439
	SRR3591711	White flower	2.017
	SRR3591712	Green floral bud	11.350
	SRR3591713	Yellow flower	0.480
SRP173429	SRR8316895	Juvenile bud stage	4.499
	SRR8316896	Juvenile bud stage	4.917
	SRR8316897	Juvenile bud stage	1.806
	SRR8316894	Third green stage	4.086
	SRR8316900	Third green stage	12.643
	SRR8316901	Third green stage	8.896
	SRR8316898	Complete white stage	1.223
	SRR8316899	Complete white stage	11.415
	SRR8316903	Complete white stage	2.470
	SRR8316902	Silver flowering stage	0.330
	SRR8316904	Silver flowering stage	0.672
	SRR8316905	Silver flowering stage	0.182
	SRR8316906	Gold flowering stage	0.353
	SRR8316907	Gold flowering stage	0.552
	SRR8316908	Gold flowering stage	0.338
SRP132670	SRR6706286	Control	11.648
	SRR6706287	Light intensity 50%	13.686
	SRR6706288	Light intensity 20%	16.007
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.133
	CNS0095593	Slightly white alabastrum(diploid) 2	7.088
	CNS0095594	Slightly white alabastrum(diploid) 3	4.693
	CNS0095595	Whole white alabastrum(diploid) 2	6.901
	CNS0095596	Whole white alabastrum(diploid) 3	7.018
	CNS0095597	Whole white alabastrum(diploid) 4	6.880
	CNS0095598	Silvery flower (diploied) 1	3.588
	CNS0095599	Silvery flower (diploied) 2	2.457
	CNS0095600	Silvery flower (diploied) 3	1.520
	CNS0095601	Golden flower (diploid) 1	2.252
	CNS0095602	Golden flower (diploid) 2	2.006
	CNS0095603	Golden flower (diploid) 3	1.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.891
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.619
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.685
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.287
	CNS0095610	Silvery flower (tetraploid) 1	2.315
	CNS0095611	Silvery flower (tetraploid) 2	3.324
	CNS0095612	Silvery flower (tetraploid) 3	1.983
	CNS0095613	Golden flower (tetraploid) 1	0.655
	CNS0095614	Golden flower (tetraploid) 2	2.021
	CNS0095615	Golden flower (tetraploid) 3	1.104
CRA001975	CRR073297	Stem 1	17.772
	CRR073298	Stem 2	15.824
	CRR073299	Stem 3	18.197
	CRR073300	Leaf 1	20.396
	CRR073301	Leaf 2	17.639
	CRR073302	Leaf 3	16.079
	CRR073303	Juvenile bud 1	21.058
	CRR073304	Juvenile bud 2	7.270
	CRR073305	Juvenile bud 3	25.023
	CRR073306	Third green 1	1.296
	CRR073307	Third green 2	0.921
	CRR073308	Third green 3	1.280
	CRR073309	Second white 1	0.263
	CRR073310	Second white 2	0.061
	CRR073311	Second white 3	0.038
	CRR073312	Silver flowering 1	0.052
	CRR073313	Silver flowering 2	0.118
	CRR073314	Silver flowering 3	0.113
	CRR073315	Gold flowering 1	6.562
	CRR073316	Gold flowering 2	6.430
	CRR073317	Gold flowering 3	7.154
	CRR073318	Tawny withering 1	0.375
	CRR073319	Tawny withering 2	0.267
	CRR073320	Tawny withering 3	0.487