Gene detail

Detail information of GWHGAAZE002942

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265837.1	0	PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Vitis vinifera]
COG	YP_003901457.1	2E-34	silent information regulator protein Sir2
Swissprot	tr\|Q9FE17\|SIR1_ARATH	0	NAD-dependent protein deacetylase SRT1
trEMBL	tr\|A0A022QHQ0\|A0A022QHQ0_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU27441.1}
TAIR10	AT5G55760.1	2E-168	sirtuin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88997921	89004098	+
GWHAAZE00000001	mRNA	88997921	89004098	+
GWHAAZE00000001	exon	88997921	88998004	+
GWHAAZE00000001	exon	88999067	88999096	+
GWHAAZE00000001	exon	88999173	88999286	+
GWHAAZE00000001	exon	89000227	89000346	+
GWHAAZE00000001	exon	89000670	89000770	+
GWHAAZE00000001	exon	89001061	89001169	+
GWHAAZE00000001	exon	89001518	89001597	+
GWHAAZE00000001	exon	89001837	89001915	+
GWHAAZE00000001	exon	89002607	89002703	+
GWHAAZE00000001	exon	89002891	89002973	+
GWHAAZE00000001	exon	89003236	89003314	+
GWHAAZE00000001	exon	89003568	89003704	+
GWHAAZE00000001	exon	89003790	89004098	+
GWHAAZE00000001	CDS	88997921	88998004	+
GWHAAZE00000001	CDS	88999067	88999096	+
GWHAAZE00000001	CDS	88999173	88999286	+
GWHAAZE00000001	CDS	89000227	89000346	+
GWHAAZE00000001	CDS	89000670	89000770	+
GWHAAZE00000001	CDS	89001061	89001169	+
GWHAAZE00000001	CDS	89001518	89001597	+
GWHAAZE00000001	CDS	89001837	89001915	+
GWHAAZE00000001	CDS	89002607	89002703	+
GWHAAZE00000001	CDS	89002891	89002973	+
GWHAAZE00000001	CDS	89003236	89003314	+
GWHAAZE00000001	CDS	89003568	89003704	+
GWHAAZE00000001	CDS	89003790	89004098	+

Transcript Sequence
>GWHTAAZE002946 ATGTCTCTGGGATATGCAGAGAAGCTTTCCTACATAGAAGATGTGGGCAACGTTGGAATGCCTGAGATTTTCGACTCACCTAAGATTGGACGCCTTGCCATGATGATACAAAAGTTAGTATCTGTTTTTGTGCAGAGTAAGCATTTAGTGGTTTTCACAGGAGCAGGAATATCAACTTCTTGTGGTATACCCGACTTTCGAGGTCCCAAGGGTATTTGGACACTTCAGCGGGAAGGTAAAGCTTTGCCAGAAGCATCGCTTCCATTTCATCGTGCTCTGCCAAGCATGACTCACATGGCTTTGGTTGAACTAGAGAAAGCTGGTATCTTAAAGTTTGTTATTAGCCAGAATATTGATGGCCTGCATCTTAGATCTGGAATACCAAGGGAGAAACTTGCTGAATTGCATGGGAACTCCTTCATGGAAATATGTCCTTCCTGTGGTGTTGAGTATTTCCGTGATTTTGAGGTGGAAACCATTGGACTGAAGGAGACATCACGACGCTGTTCCAATGCTGATTGTGGCGCAAAACTTAAGGATACGGTTCTTGATTGGGAGGATGCCTTGCCCCCAAAAGAGATAAATCCAGCAGAGAAGCACTGCAAAATGGCTGATGTTGTATTATGTCTAGGGACAAGTTTGCAGATTACTCCTGCATGCAATTTGCCTCTAAAATGTCTACGTGGTGGGGGAAAGATTGCGATTGTGAATCTTCAGGTAATTGGAGGAGTTATGGACTTACTGAATCTGCGGATTCTTCCATTTGTTAGAATCGATCTTCTACAGACCATTTTTACTCAGACCTTGAGCTTAGATAAAAGGTACGTTAACTGGATTCTCAAGGTTGCAAGTGTGCATGGAACAAAAGCTCCATTACCCTTCATTAAATCTGTTGAGGTTTCCTTCTCAGATGGGCAAAACATGAAAGAAGCTGTTTTAGACAAGCAGCCACTTCGGCTGAAAAGGTACCTCTACATCCAATGGATTTCCGGTGTATCACATTTCAGGAGGACAGCAGTTTCATCAAAGCCATTTGATATTCTATTGAAACTGAACTTCAGCAACGGTTGTGGGTGCTCTTGCAGCCGAATCAAGATTCCTGTTGATTTTGAGGTTTCAACGGAGTGTTTTAAGCATGAGAAGGATTCGGTGTTTGAAAAGCTGAAAGATAAAGCCATAGAAGATCCAAGCTGTGGGCAGAATGCAATTATAGAGACAACAACTACTATAGCCCCCAAAAGCAAGGAGACTGTCCGTGCCATTGTAACAAACATCATTTGCTACGATAAAGCATGTCATAAATCTTCTTCTAAAGCGGCTCCTTCACGTAATGGGGCGTTGAAAAGGAGAGATGAAGATGGGAATGAGATCGAAATATCTTGGAAGCGTACGAAAAGGCGGAAGCATAAAATTAGACTGTAG

Network for GWHGAAZE002942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02146.18	SIR2	54	77	9.70E-06
PF02146.18	SIR2	89	218	1.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11416	SIRT6, SIR2L6	Metabolic pathways	map01100
		Nicotinate and nicotinamide metabolism	map00760
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0070403	molecular_function	NAD+ binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.430
	SRR3591706	second leaf	7.665
	SRR3591707	mature leaf	5.233
	SRR3591708	Shoot apex	15.323
	SRR3591709	Stem	8.423
	SRR3591710	White floral bud	7.624
	SRR3591711	White flower	7.074
	SRR3591712	Green floral bud	15.171
	SRR3591713	Yellow flower	4.247
SRP173429	SRR8316895	Juvenile bud stage	10.445
	SRR8316896	Juvenile bud stage	13.549
	SRR8316897	Juvenile bud stage	7.463
	SRR8316894	Third green stage	6.690
	SRR8316900	Third green stage	21.063
	SRR8316901	Third green stage	18.422
	SRR8316898	Complete white stage	3.725
	SRR8316899	Complete white stage	22.396
	SRR8316903	Complete white stage	5.835
	SRR8316902	Silver flowering stage	1.983
	SRR8316904	Silver flowering stage	4.503
	SRR8316905	Silver flowering stage	1.309
	SRR8316906	Gold flowering stage	4.298
	SRR8316907	Gold flowering stage	2.976
	SRR8316908	Gold flowering stage	3.265
SRP132670	SRR6706286	Control	7.250
	SRR6706287	Light intensity 50%	9.087
	SRR6706288	Light intensity 20%	11.360
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.775
	CNS0095593	Slightly white alabastrum(diploid) 2	18.688
	CNS0095594	Slightly white alabastrum(diploid) 3	11.610
	CNS0095595	Whole white alabastrum(diploid) 2	12.212
	CNS0095596	Whole white alabastrum(diploid) 3	9.992
	CNS0095597	Whole white alabastrum(diploid) 4	9.751
	CNS0095598	Silvery flower (diploied) 1	8.062
	CNS0095599	Silvery flower (diploied) 2	7.632
	CNS0095600	Silvery flower (diploied) 3	5.067
	CNS0095601	Golden flower (diploid) 1	6.888
	CNS0095602	Golden flower (diploid) 2	4.652
	CNS0095603	Golden flower (diploid) 3	4.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.295
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.914
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.377
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.264
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.882
	CNS0095610	Silvery flower (tetraploid) 1	7.370
	CNS0095611	Silvery flower (tetraploid) 2	8.269
	CNS0095612	Silvery flower (tetraploid) 3	5.187
	CNS0095613	Golden flower (tetraploid) 1	5.603
	CNS0095614	Golden flower (tetraploid) 2	6.290
	CNS0095615	Golden flower (tetraploid) 3	3.361
CRA001975	CRR073297	Stem 1	16.943
	CRR073298	Stem 2	13.818
	CRR073299	Stem 3	7.142
	CRR073300	Leaf 1	20.674
	CRR073301	Leaf 2	20.547
	CRR073302	Leaf 3	10.919
	CRR073303	Juvenile bud 1	10.523
	CRR073304	Juvenile bud 2	6.616
	CRR073305	Juvenile bud 3	10.596
	CRR073306	Third green 1	0.274
	CRR073307	Third green 2	1.181
	CRR073308	Third green 3	0.490
	CRR073309	Second white 1	1.112
	CRR073310	Second white 2	0.628
	CRR073311	Second white 3	0.682
	CRR073312	Silver flowering 1	0.888
	CRR073313	Silver flowering 2	0.454
	CRR073314	Silver flowering 3	0.867
	CRR073315	Gold flowering 1	1.985
	CRR073316	Gold flowering 2	5.012
	CRR073317	Gold flowering 3	2.641
	CRR073318	Tawny withering 1	5.274
	CRR073319	Tawny withering 2	10.214
	CRR073320	Tawny withering 3	7.304