Gene detail

Detail information of GWHGAAZE002917

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276224.1	0	PREDICTED: uncharacterized protein LOC100260706 [Vitis vinifera]
trEMBL	tr\|A0A067F7Y6\|A0A067F7Y6_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO62225.1} (Fragment)
TAIR10	AT5G55580.1	6E-147	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88546391	88548103	+
GWHAAZE00000001	mRNA	88546391	88548103	+
GWHAAZE00000001	exon	88546391	88546435	+
GWHAAZE00000001	exon	88546555	88546633	+
GWHAAZE00000001	exon	88546703	88546851	+
GWHAAZE00000001	exon	88546931	88547620	+
GWHAAZE00000001	exon	88547789	88548103	+
GWHAAZE00000001	CDS	88546391	88546435	+
GWHAAZE00000001	CDS	88546555	88546633	+
GWHAAZE00000001	CDS	88546703	88546851	+
GWHAAZE00000001	CDS	88546931	88547620	+
GWHAAZE00000001	CDS	88547789	88548103	+

Transcript Sequence
>GWHTAAZE002921 GCATTGTGTGTCACTTTAGCTCCGAATTTAATTGGGAAGCTTATGGGCGAATTCTCAGAAGAAGAAGACTCTGATGCTGTTAGACTTAGATTCAAGTCACAGGACACAACTAATGGACTACATGGAAGGCCAAGGGAGTCTGAAAAAGGATTTAGGCGAAGCCCTATAACATCCGAAGGTCAATTGGAAATAAAGAATGGCAAGAGCATCTTGGACAAAAAAAGCGGCCGTTCTTATGATACTCTAAAGAAACTCAATAATACGAGAAAAAAGGTGGCAGGGGACTCTACAATGAACAGATTTCGACGTCTGTCGGAGGAGCTAGGGCTAGATGAGAGATCGTTTCTACTTCTTGATTACTTGACCTCTTTTGGACTCAAGGAATCACATCTTATTCAAATGTATGAGCGGCACATGCCTTCCCTTCAGATAAATGAGGCTTCTGCAAGGGAAAGATTGGAGTTTTTGATAAGCATTGGTGTCAAGCAGAAAGACATTAGAAAGATACTTTTGAGGCAGCCTCAAATTTTGGAGTATACAGTAGAGAACAATCTAAAATCCCATGTTGCTTTTTTGACGAGTTTGGGTATTCCAGATTCCAGAATAGGACAGATAATTACTGCCACTCCATCTCTGTTTTCTTATAGTGTGGAGAATTCATTGAAACCCACAGTGAGGTACTTGCTTGAGGAGGTTGGAATTAAAAAGAACGATCTAAGTAAAGTTGTGCAGCTAAGCCCTCAAATACTGGTTCAGCGGATTGAGAATACATGGATCACTCGTTTTAGATTTCTTACAAAGGAACTGGGAGCACCCAGAGAGAATATTGTGAAGATGGTTACGAAACACCCCCAGCTCCTTCACTATAGCATTGAGGATGGATTACTGCCTAGAATTAATTTCCTGAGGAGTATTGGAATGCGTAACTCCGACATATTGAAAGTATCGACGAGCCTTACCCAGGTATTTTCATTGTCTCTTGAGAGAAATTTGAAGCCTAAGTACATGTACTTGGTCAATGAACTTCGAAATGAAGTGCAATCGTTGACCAAATATCCTACATACCTAAGCTTGTCTTTGGATCAGAGAATCCGACCTAGGCACAGGTTTTTGGTTGCCCTAAAGAAAGCCCCGAAGGGTCCATTCCCTTTGAGTTCATTTGTTCTGACCGATGAAAGCTTCTGTCAGCAGTGGGCAAGAACTAGCGTAGATAAATATTTGGAGTTCCGGCAGAAATTGCTACTCAAGGATTTTGCAAAGAAATATGAAAGACACTAA

Network for GWHGAAZE002917

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	70	229	1.40E-16
PF02536.15	mTERF	181	386	2.40E-39

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.164
	SRR3591706	second leaf	17.164
	SRR3591707	mature leaf	36.160
	SRR3591708	Shoot apex	16.495
	SRR3591709	Stem	9.642
	SRR3591710	White floral bud	4.877
	SRR3591711	White flower	12.123
	SRR3591712	Green floral bud	4.449
	SRR3591713	Yellow flower	7.628
SRP173429	SRR8316895	Juvenile bud stage	4.849
	SRR8316896	Juvenile bud stage	6.059
	SRR8316897	Juvenile bud stage	3.399
	SRR8316894	Third green stage	3.650
	SRR8316900	Third green stage	6.025
	SRR8316901	Third green stage	7.169
	SRR8316898	Complete white stage	2.247
	SRR8316899	Complete white stage	9.962
	SRR8316903	Complete white stage	4.269
	SRR8316902	Silver flowering stage	3.597
	SRR8316904	Silver flowering stage	6.292
	SRR8316905	Silver flowering stage	2.633
	SRR8316906	Gold flowering stage	7.549
	SRR8316907	Gold flowering stage	6.018
	SRR8316908	Gold flowering stage	6.348
SRP132670	SRR6706286	Control	2.402
	SRR6706287	Light intensity 50%	2.092
	SRR6706288	Light intensity 20%	2.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.740
	CNS0095593	Slightly white alabastrum(diploid) 2	2.494
	CNS0095594	Slightly white alabastrum(diploid) 3	1.985
	CNS0095595	Whole white alabastrum(diploid) 2	2.013
	CNS0095596	Whole white alabastrum(diploid) 3	2.225
	CNS0095597	Whole white alabastrum(diploid) 4	2.508
	CNS0095598	Silvery flower (diploied) 1	7.436
	CNS0095599	Silvery flower (diploied) 2	3.903
	CNS0095600	Silvery flower (diploied) 3	7.861
	CNS0095601	Golden flower (diploid) 1	6.145
	CNS0095602	Golden flower (diploid) 2	9.485
	CNS0095603	Golden flower (diploid) 3	8.714
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.654
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.748
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.460
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.792
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.483
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.570
	CNS0095610	Silvery flower (tetraploid) 1	14.053
	CNS0095611	Silvery flower (tetraploid) 2	14.419
	CNS0095612	Silvery flower (tetraploid) 3	2.003
	CNS0095613	Golden flower (tetraploid) 1	5.138
	CNS0095614	Golden flower (tetraploid) 2	10.549
	CNS0095615	Golden flower (tetraploid) 3	6.511
CRA001975	CRR073297	Stem 1	5.592
	CRR073298	Stem 2	3.474
	CRR073299	Stem 3	1.716
	CRR073300	Leaf 1	2.573
	CRR073301	Leaf 2	2.107
	CRR073302	Leaf 3	1.249
	CRR073303	Juvenile bud 1	0.995
	CRR073304	Juvenile bud 2	1.077
	CRR073305	Juvenile bud 3	1.155
	CRR073306	Third green 1	0.057
	CRR073307	Third green 2	0.209
	CRR073308	Third green 3	0.153
	CRR073309	Second white 1	0.214
	CRR073310	Second white 2	0.394
	CRR073311	Second white 3	0.424
	CRR073312	Silver flowering 1	0.494
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.964
	CRR073316	Gold flowering 2	6.833
	CRR073317	Gold flowering 3	3.602
	CRR073318	Tawny withering 1	1.053
	CRR073319	Tawny withering 2	2.112
	CRR073320	Tawny withering 3	2.966