Gene detail

Detail information of GWHGAAZE002894

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010270112.1	0	PREDICTED: cell division protein FtsZ homolog 1, chloroplastic-like [Nelumbo nucifera]
COG	YP_005071738.1	2E-116	cell division protein FtsZ
Swissprot	tr\|Q42545\|FTSZ1_ARATH	0	Cell division protein FtsZ homolog 1, chloroplastic (Precursor)
trEMBL	tr\|W9RBJ2\|W9RBJ2_9ROSA	0	Cell division protein FtsZ-1-like protein {ECO:0000313\|EMBL:EXB81097.1}
TAIR10	AT5G55280.1	1E-145	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88183563	88188033	-
GWHAAZE00000001	mRNA	88183563	88188033	-
GWHAAZE00000001	exon	88183563	88183850	-
GWHAAZE00000001	exon	88184467	88184700	-
GWHAAZE00000001	exon	88185679	88185910	-
GWHAAZE00000001	exon	88186005	88186283	-
GWHAAZE00000001	exon	88186427	88186575	-
GWHAAZE00000001	exon	88187743	88188033	-
GWHAAZE00000001	CDS	88187743	88188033	-
GWHAAZE00000001	CDS	88186427	88186575	-
GWHAAZE00000001	CDS	88186005	88186283	-
GWHAAZE00000001	CDS	88185679	88185910	-
GWHAAZE00000001	CDS	88184467	88184700	-
GWHAAZE00000001	CDS	88183563	88183850	-

Transcript Sequence
>GWHTAAZE002898 ATGGCTACACTACAGCTTAGAAACCCCACGCAATTGATTTCGTCGTCTTCTTCATCTTCTTCTTCCATTTTCACCGGATTTTACCAGACTCCACCACCCTCTCCATTTGCTTCATCAACAAAAACATGTTCTTTTCCAAGGAGGAATCTCCCACAACGGCGCCGTTCTCAGCTATCCTGCACCTGTAGTTCGCTGAGCTCATCATCAATGGATTCGGCCAAGATTAAGGTTGTCGGTGTTGGTGGCGGTGGCAACAATGCCGTTAATCGCATGATTGGTAGCGGCTTGCAGGGTGTTGATTTCTTTGCCATAAATACCGATGCTCAGGCACTATTGCAATCTGCTGCTGAGAACCCAATCCAAATTGGAGAGCTTTTGACTCGTGGACTTGGTCCGGCACTCTCACTATTGTCTAAGAATCTTCCTTATGAAGCTTCAATTCCCCTTGATTTGAATTTTAATGGAGATGATGCAGGTACGGGTGGGAATCCACTTTTGGGGGAACAGGCTGCAGATGAATCAAAGGAAGCCATTGCAAATGCTCTTAAAGGTTCAGATCTTGTGTTTATTACAGCAGGGATGGGTGGGGGTACAGGGTCCGGTGCTGCTCCCATAGTCGCCCAGATATCAAAGGAAGCTGGTTATTTGACTGTTGGTGTTGTGACCTACCCGTTCAGCTTTGAAGGACGTAAAAGATCTCTTCAGGCAGGTGCCATTTTTATTTCATTTCTTTTCTTATCCCAATGTGCTTACATCTTTCTCTTACATATGTTTCTTTTCCAGGCAGTGGAGGCAATTGAAAAGTTACAAAAAAATGTTGATACTCTTATAGTGATTCCCAATGACCGTCTGTTGGATATTGCTGATGAACAAACACCTCTTCAGGATGCTTTCCTACTTGCTGATGATGTACTGCGTCAAGGGGTCCAAGGCATCTCTGATATAATCACTATACCTGGGCTGGTGAATGTGGATTTTGCGGATGTAAAGGCAGTGATGAAGAACTCTGGGACAGCAATGCTTGGGGTGGGGGTTTCAGCCGGCAAAAACCGTGCTGATGAAGCAGCGGAACAAGCAACTCTAGCTCCTCTGGTTGGATCATCAATTCAATCTGCCACTGGAATAGTCTATAATATTACTGGAGGCAAGGACATAACTTTGCAAGAAGTTAACAGGGTGTCTCAGGTTGTCACAAGTTTGGCTGATCCATCAGCAAACATAATATTTGGGGCGGTTGTGGATGAGAGGTTCAATGGGGAGATACATGTGACCATCATCGCAACTGGTTTCTCACAGTCATTTCAGAATAATCTTCTGTCCAATCCCAAGGGAGCAAAGGCTGCTGATAGAGGAGGGACCAGAGATAGCCAAGAAAGCATAAACCCGTCATCTGATCCCCCCAAGTCATCTTCTAACTCACCTTCCAACCCACCATCAAGACCAGTAGCACCTCAAAGAAGGCTCTTCTTCTAA

Network for GWHGAAZE002894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	158	236	3.70E-19
PF12327.9	FtsZ_C	337	430	2.30E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03531	ftsZ	Cell cycle - Caulobacter	map04112

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.200
	SRR3591706	second leaf	27.495
	SRR3591707	mature leaf	21.127
	SRR3591708	Shoot apex	43.320
	SRR3591709	Stem	11.207
	SRR3591710	White floral bud	20.305
	SRR3591711	White flower	20.628
	SRR3591712	Green floral bud	42.945
	SRR3591713	Yellow flower	20.346
SRP173429	SRR8316895	Juvenile bud stage	20.964
	SRR8316896	Juvenile bud stage	33.106
	SRR8316897	Juvenile bud stage	15.213
	SRR8316894	Third green stage	14.794
	SRR8316900	Third green stage	48.629
	SRR8316901	Third green stage	40.315
	SRR8316898	Complete white stage	6.774
	SRR8316899	Complete white stage	31.658
	SRR8316903	Complete white stage	9.864
	SRR8316902	Silver flowering stage	5.820
	SRR8316904	Silver flowering stage	7.649
	SRR8316905	Silver flowering stage	4.281
	SRR8316906	Gold flowering stage	15.832
	SRR8316907	Gold flowering stage	15.627
	SRR8316908	Gold flowering stage	15.192
SRP132670	SRR6706286	Control	32.186
	SRR6706287	Light intensity 50%	34.496
	SRR6706288	Light intensity 20%	38.573
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.930
	CNS0095593	Slightly white alabastrum(diploid) 2	22.308
	CNS0095594	Slightly white alabastrum(diploid) 3	20.266
	CNS0095595	Whole white alabastrum(diploid) 2	24.593
	CNS0095596	Whole white alabastrum(diploid) 3	28.455
	CNS0095597	Whole white alabastrum(diploid) 4	21.402
	CNS0095598	Silvery flower (diploied) 1	11.743
	CNS0095599	Silvery flower (diploied) 2	13.205
	CNS0095600	Silvery flower (diploied) 3	12.760
	CNS0095601	Golden flower (diploid) 1	11.556
	CNS0095602	Golden flower (diploid) 2	12.278
	CNS0095603	Golden flower (diploid) 3	11.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.243
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.661
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.278
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.311
	CNS0095610	Silvery flower (tetraploid) 1	15.711
	CNS0095611	Silvery flower (tetraploid) 2	15.720
	CNS0095612	Silvery flower (tetraploid) 3	17.558
	CNS0095613	Golden flower (tetraploid) 1	8.911
	CNS0095614	Golden flower (tetraploid) 2	11.588
	CNS0095615	Golden flower (tetraploid) 3	8.354
CRA001975	CRR073297	Stem 1	39.243
	CRR073298	Stem 2	39.880
	CRR073299	Stem 3	40.720
	CRR073300	Leaf 1	42.022
	CRR073301	Leaf 2	40.497
	CRR073302	Leaf 3	42.929
	CRR073303	Juvenile bud 1	37.354
	CRR073304	Juvenile bud 2	32.617
	CRR073305	Juvenile bud 3	34.010
	CRR073306	Third green 1	13.401
	CRR073307	Third green 2	5.504
	CRR073308	Third green 3	10.048
	CRR073309	Second white 1	10.554
	CRR073310	Second white 2	8.828
	CRR073311	Second white 3	10.704
	CRR073312	Silver flowering 1	15.601
	CRR073313	Silver flowering 2	14.908
	CRR073314	Silver flowering 3	14.719
	CRR073315	Gold flowering 1	29.987
	CRR073316	Gold flowering 2	44.154
	CRR073317	Gold flowering 3	33.252
	CRR073318	Tawny withering 1	16.762
	CRR073319	Tawny withering 2	14.222
	CRR073320	Tawny withering 3	17.889