Gene detail

Detail information of GWHGAAZE002870

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004244099.1	0	PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Solanum lycopersicum]
COG	YP_004055489.1	2E-60	glycoside hydrolase family protein
Swissprot	tr\|D2WL32\|GLGB3_ARATH	8E-172	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|K4CHG2\|K4CHG2_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g064830.2.1}
TAIR10	AT3G20440.2	5E-135	Alpha amylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87830879	87834986	+
GWHAAZE00000001	mRNA	87830879	87834986	+
GWHAAZE00000001	exon	87830879	87830985	+
GWHAAZE00000001	exon	87831902	87832004	+
GWHAAZE00000001	exon	87832122	87832259	+
GWHAAZE00000001	exon	87832569	87832640	+
GWHAAZE00000001	exon	87832773	87832877	+
GWHAAZE00000001	exon	87832980	87833054	+
GWHAAZE00000001	exon	87833126	87833233	+
GWHAAZE00000001	exon	87833428	87833508	+
GWHAAZE00000001	exon	87833771	87833875	+
GWHAAZE00000001	exon	87833998	87834083	+
GWHAAZE00000001	exon	87834218	87834272	+
GWHAAZE00000001	exon	87834548	87834986	+
GWHAAZE00000001	CDS	87830879	87830985	+
GWHAAZE00000001	CDS	87831902	87832004	+
GWHAAZE00000001	CDS	87832122	87832259	+
GWHAAZE00000001	CDS	87832569	87832640	+
GWHAAZE00000001	CDS	87832773	87832877	+
GWHAAZE00000001	CDS	87832980	87833054	+
GWHAAZE00000001	CDS	87833126	87833233	+
GWHAAZE00000001	CDS	87833428	87833508	+
GWHAAZE00000001	CDS	87833771	87833875	+
GWHAAZE00000001	CDS	87833998	87834083	+
GWHAAZE00000001	CDS	87834218	87834272	+
GWHAAZE00000001	CDS	87834548	87834580	+
GWHAAZE00000001	three_prime_UTR	87834581	87834986	+

Transcript Sequence
>GWHTAAZE002874 ATGAAGATTAAGCAGAAAACGAGCTTGGAAATCGGATCTGAGCAGAACAAAAAATCGAGTAGAAACCGGCCTAGAGCCTTTGCCGGAAAATCGAGTCTGAAAAGCGAGTACTGTAATCAATATGTTGATAGGGATGCATTGTTGTACCTCATTTTAGCAAATGAGATATTACATGTTGTTCATCCTAACATAGTAACAATTGCCGAAGATGCAACGCTTTATCCTGGACTATGTGAGCCAACTTCTCAAGGTGGATTGGGATTTGATTACTTTGTCAATCTTTCGGCATCAGAAATGTGGTTGTGGTTTCTTGAGAACCTACCTGACCATGATTGGACCATGAGTAAGATCGTGAGTACGCTAATGGGCAACAGGCAAAGTACCGATAAGATGATTTTGTATGCTGAAAATCACAACCAGTCTATTTCTGGAGGGCGGTCGTTTGCAGAAATATTGTTTGGTGAAGTCATGAAGGGGTCAACCATAACAAAAGACTCATTGCTAAGAGGTTGTTCACTGCATAAAATGATCAGACTAATTACTTTCACAATTGGTGGTGCTTACCTCAACTTCATGGGCAATGAATTTGGACATCCAGAGAGGGTAGAGTTCCCAATGTCAAGCAACAATTTCTCGTTTTTGCTGGCTAATCGTCGATGGGATCTTTTGGCTAAAGAAGTCCATCGTGATTTGTTTTCCTTTGATAAGGACATGATGAGCTTGGATGAAGGTGAAAGAATACTTTCAAGAGGCGTTTCTAACGTTCACCATGTCAATGACACCAATATGGTGATATCTTACTTAAGAGGTCCATTTCTCTTCATATTCAACTTTCATCCCACAAATTCGTATGAAGCATACGGTGTTGGGGTGGAAGAAGCTGGCGAATATCAAGTCATACTGAATACTGATGAAAAGAAGTACTATGGTCTGGGATTAATAGGGCATGATCAATACCTTCGCAAAACCATTACTAAAAGAGTTGATGGTTTCCGAAACTGCTTAGAAGTGCCACTGCCTAGTCGGAGTGCTCAGGTCTACAAATTAACACGGATTTTGAGAATATGAAACTGTTTGAGAAATATATGATTCTTGGAGTAACATAAGCTATGATAGACTGCTCAAGCATATATAGGCATTTTGGTCGGATAGTTTCTTCTGGCTGCATGTTTGAACAGTGTGATGCAGCAGATGGGGAGGCTGCATCGGAAGAGGCCTAAACTAGTGCACAAGAGGTAAAGTAACTGTTAATATCGAAACCATACATTTCCTCGTTCATGGCAGAGATAGAGTTGTATTCTGGCTGTAAATTTGGCGGACATATATCACTGTGGTCCCTCAAGGTTTGCTATGGCTTCATGTTTTGGAGCTTTGTTTTCTTGATCTTGTTTTTCTTTTAACTGATACTGTTGTATTGAAATTGATAGATGATCAGTTTTTATAAATGCATGAGTTTTATAATTTTTACCTCCAA

Network for GWHGAAZE002870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02806.19	Alpha-amylase_C	257	349	6.40E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00700	GBE1, glgB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.270
	SRR3591706	second leaf	3.673
	SRR3591707	mature leaf	3.049
	SRR3591708	Shoot apex	9.771
	SRR3591709	Stem	2.866
	SRR3591710	White floral bud	3.760
	SRR3591711	White flower	4.356
	SRR3591712	Green floral bud	5.428
	SRR3591713	Yellow flower	4.205
SRP173429	SRR8316895	Juvenile bud stage	3.558
	SRR8316896	Juvenile bud stage	5.407
	SRR8316897	Juvenile bud stage	3.587
	SRR8316894	Third green stage	1.895
	SRR8316900	Third green stage	5.736
	SRR8316901	Third green stage	5.875
	SRR8316898	Complete white stage	1.054
	SRR8316899	Complete white stage	6.099
	SRR8316903	Complete white stage	1.936
	SRR8316902	Silver flowering stage	1.549
	SRR8316904	Silver flowering stage	2.400
	SRR8316905	Silver flowering stage	0.869
	SRR8316906	Gold flowering stage	4.067
	SRR8316907	Gold flowering stage	2.279
	SRR8316908	Gold flowering stage	3.552
SRP132670	SRR6706286	Control	1.944
	SRR6706287	Light intensity 50%	2.488
	SRR6706288	Light intensity 20%	2.344
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.554
	CNS0095593	Slightly white alabastrum(diploid) 2	3.997
	CNS0095594	Slightly white alabastrum(diploid) 3	2.380
	CNS0095595	Whole white alabastrum(diploid) 2	2.637
	CNS0095596	Whole white alabastrum(diploid) 3	3.045
	CNS0095597	Whole white alabastrum(diploid) 4	2.741
	CNS0095598	Silvery flower (diploied) 1	3.560
	CNS0095599	Silvery flower (diploied) 2	2.192
	CNS0095600	Silvery flower (diploied) 3	2.270
	CNS0095601	Golden flower (diploid) 1	2.046
	CNS0095602	Golden flower (diploid) 2	2.534
	CNS0095603	Golden flower (diploid) 3	2.382
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.874
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.781
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.684
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.468
	CNS0095610	Silvery flower (tetraploid) 1	4.561
	CNS0095611	Silvery flower (tetraploid) 2	4.567
	CNS0095612	Silvery flower (tetraploid) 3	4.001
	CNS0095613	Golden flower (tetraploid) 1	3.558
	CNS0095614	Golden flower (tetraploid) 2	2.937
	CNS0095615	Golden flower (tetraploid) 3	1.653
CRA001975	CRR073297	Stem 1	2.968
	CRR073298	Stem 2	2.139
	CRR073299	Stem 3	2.050
	CRR073300	Leaf 1	3.195
	CRR073301	Leaf 2	1.898
	CRR073302	Leaf 3	1.670
	CRR073303	Juvenile bud 1	2.092
	CRR073304	Juvenile bud 2	1.135
	CRR073305	Juvenile bud 3	2.536
	CRR073306	Third green 1	0.671
	CRR073307	Third green 2	0.031
	CRR073308	Third green 3	0.463
	CRR073309	Second white 1	0.723
	CRR073310	Second white 2	0.499
	CRR073311	Second white 3	0.812
	CRR073312	Silver flowering 1	0.569
	CRR073313	Silver flowering 2	0.669
	CRR073314	Silver flowering 3	0.173
	CRR073315	Gold flowering 1	1.275
	CRR073316	Gold flowering 2	3.890
	CRR073317	Gold flowering 3	1.534
	CRR073318	Tawny withering 1	1.894
	CRR073319	Tawny withering 2	1.062
	CRR073320	Tawny withering 3	1.789